Publications

Found 16 results
Filters: Author is Bonvin, Alexandre M J J  [Clear All Filters]
2016
Bohnuud, T., L. Luo, S. J. Wodak, A. M. J. J. Bonvin, Z. Weng, S. Vajda, O. Schueler-Furman, and D. Kozakov, "A benchmark testing ground for integrating homology modeling and protein docking.", Proteins, 2016 May 12.
Lensink, M. F., S. Velankar, A. Kryshtafovych, S-Y. Huang, D. Schneidman-Duhovny, A. Sali, J. Segura, N. Fernandez-Fuentes, S. Viswanath, R. Elber, et al., "Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.", Proteins, vol. 84 Suppl 1, pp. 323-48, 2016 Sep.
2015
Vranken, W. F., G. W. Vuister, and A. M. J. J. Bonvin, "NMR-based modeling and refinement of protein 3D structures.", Methods Mol Biol, vol. 1215, pp. 351-80, 2015.
2014
Lensink, M. F., I. H. Moal, P. A. Bates, P. L. Kastritis, A. S. J. Melquiond, E. Karaca, C. Schmitz, M. van Dijk, A. M. J. J. Bonvin, M. Eisenstein, et al., "Blind prediction of interfacial water positions in CAPRI.", Proteins, vol. 82, issue 4, pp. 620-32, 2014 Apr.
2013
Moretti, R., S. J. Fleishman, R. Agius, M. Torchala, P. A. Bates, P. L. Kastritis, J. P. G. L. M. Rodrigues, M. Trellet, A. M. J. J. Bonvin, M. Cui, et al., "Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.", Proteins, vol. 81, issue 11, pp. 1980-7, 2013 Nov.
van der Schot, G., Z. Zhang, R. Vernon, Y. Shen, W. F. Vranken, D. Baker, A. M. J. J. Bonvin, and O. F. Lange, "Improving 3D structure prediction from chemical shift data.", J Biomol NMR, vol. 57, issue 1, pp. 27-35, 2013 Sep.
2012
Rosato, A., J. M. Aramini, C. Arrowsmith, A. Bagaria, D. Baker, A. Cavalli, J. F. Doreleijers, A. Eletsky, A. Giachetti, P. Guerry, et al., "Blind testing of routine, fully automated determination of protein structures from NMR data.", Structure, vol. 20, issue 2, pp. 227-36, 2012 Feb 8.
2011
Fleishman, S. J., T. A. Whitehead, E-M. Strauch, J. E. Corn, S. Qin, H-X. Zhou, J. C. Mitchell, O. N. A. Demerdash, M. Takeda-Shitaka, G. Terashi, et al., "Community-wide assessment of protein-interface modeling suggests improvements to design methodology.", J Mol Biol, vol. 414, issue 2, pp. 289-302, 2011 Nov 25.
2009
Rosato, A., A. Bagaria, D. Baker, B. Bardiaux, A. Cavalli, J. F. Doreleijers, A. Giachetti, P. Guerry, P. Güntert, T. Herrmann, et al., "CASD-NMR: critical assessment of automated structure determination by NMR.", Nat Methods, vol. 6, issue 9, pp. 625-6, 2009 Sep.
2006
Tomaselli, S., V. Esposito, P. Vangone, N. A. J. van Nuland, A. M. J. J. Bonvin, R. Guerrini, T. Tancredi, P. A. Temussi, and D. Picone, "The alpha-to-beta conformational transition of Alzheimer's Abeta-(1-42) peptide in aqueous media is reversible: a step by step conformational analysis suggests the location of beta conformation seeding.", Chembiochem, vol. 7, issue 2, pp. 257-67, 2006 Feb.
Sibille, N., A. Favier, A. I. Azuaga, G. Ganshaw, R. Bott, A. M. J. J. Bonvin, R. Boelens, and N. A. J. van Nuland, "Comparative NMR study on the impact of point mutations on protein stability of Pseudomonas mendocina lipase.", Protein Sci, vol. 15, issue 8, pp. 1915-27, 2006 Aug.
2004
Hsu, S-T. D., E. Breukink, E. Tischenko, M. A. G. Lutters, B. de Kruijff, R. Kaptein, A. M. J. J. Bonvin, and N. A. J. van Nuland, "The nisin-lipid II complex reveals a pyrophosphate cage that provides a blueprint for novel antibiotics.", Nat Struct Mol Biol, vol. 11, issue 10, pp. 963-7, 2004 Oct.
Tzakos, A. G., P. Fuchs, N. A. J. van Nuland, A. Troganis, T. Tselios, S. Deraos, J. Matsoukas, I. P. Gerothanassis, and A. M. J. J. Bonvin, "NMR and molecular dynamics studies of an autoimmune myelin basic protein peptide and its antagonist: structural implications for the MHC II (I-Au)-peptide complex from docking calculations.", Eur J Biochem, vol. 271, issue 16, pp. 3399-413, 2004 Aug.
2003
Tzakos, A. G., A. M. J. J. Bonvin, A. Troganis, P. Cordopatis, M. L. Amzel, I. P. Gerothanassis, and N. A. J. van Nuland, "On the molecular basis of the recognition of angiotensin II (AII). NMR structure of AII in solution compared with the X-ray structure of AII bound to the mAb Fab131.", Eur J Biochem, vol. 270, issue 5, pp. 849-60, 2003 Mar.
Hsu, S-T. D., E. Breukink, G. Bierbaum, H-G. Sahl, B. de Kruijff, R. Kaptein, N. A. J. van Nuland, and A. M. J. J. Bonvin, "NMR study of mersacidin and lipid II interaction in dodecylphosphocholine micelles. Conformational changes are a key to antimicrobial activity.", J Biol Chem, vol. 278, issue 15, pp. 13110-7, 2003 Apr 11.
2002
Hsu, S-T., E. Breukink, B. de Kruijff, R. Kaptein, A. M. J. J. Bonvin, and N. A. J. van Nuland, "Mapping the targeted membrane pore formation mechanism by solution NMR: the nisin Z and lipid II interaction in SDS micelles.", Biochemistry, vol. 41, issue 24, pp. 7670-6, 2002 Jun 18.