Publications
Found 27 results
Filters: Keyword is Protein Interaction Mapping and Author is Shoshana J Wodak [Clear All Filters]
"Blind prediction of interfacial water positions in CAPRI.",
Proteins, vol. 82, issue 4, pp. 620-32, 2014 Apr.
"Navigating the global protein-protein interaction landscape using iRefWeb.",
Methods Mol Biol, vol. 1091, pp. 315-31, 2014.
"Score_set: a CAPRI benchmark for scoring protein complexes.",
Proteins, vol. 82, issue 11, pp. 3163-9, 2014 Nov.
"Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.",
Proteins, vol. 81, issue 11, pp. 1980-7, 2013 Nov.
"Docking, scoring, and affinity prediction in CAPRI.",
Proteins, vol. 81, issue 12, pp. 2082-95, 2013 Dec.
"Protein-protein interaction networks: the puzzling riches.",
Curr Opin Struct Biol, vol. 23, issue 6, pp. 941-53, 2013 Dec.
"Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae.",
Nature, vol. 489, issue 7417, pp. 585-9, 2012 Sep 27.
"DAnCER: disease-annotated chromatin epigenetics resource.",
Nucleic Acids Res, vol. 39, issue Database issue, pp. D889-94, 2011 Jan.
"High-throughput analyses and curation of protein interactions in yeast.",
Methods Mol Biol, vol. 759, pp. 381-406, 2011.
"Interaction databases on the same page.",
Nat Biotechnol, vol. 29, issue 5, pp. 391-3, 2011 May.
"OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms.",
Bioinformatics, vol. 27, issue 6, pp. 883-4, 2011 Mar 15.
"Blind predictions of protein interfaces by docking calculations in CAPRI.",
Proteins, vol. 78, issue 15, pp. 3085-95, 2010 Nov 15.
"Docking and scoring protein interactions: CAPRI 2009.",
Proteins, vol. 78, issue 15, pp. 3073-84, 2010 Nov 15.
"The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses.",
Proteins, vol. 78, issue 9, pp. 2075-89, 2010 Jul.
"iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence.",
Database (Oxford), vol. 2010, pp. baq023, 2010.
"Literature curation of protein interactions: measuring agreement across major public databases.",
Database (Oxford), vol. 2010, pp. baq026, 2010.
"Challenges and rewards of interaction proteomics.",
Mol Cell Proteomics, vol. 8, issue 1, pp. 3-18, 2009 Jan.
"Markov clustering versus affinity propagation for the partitioning of protein interaction graphs.",
BMC Bioinformatics, vol. 10, pp. 99, 2009.
"Up-to-date catalogues of yeast protein complexes.",
Nucleic Acids Res, vol. 37, issue 3, pp. 825-31, 2009 Feb.
"Docking and scoring protein complexes: CAPRI 3rd Edition.",
Proteins, vol. 69, issue 4, pp. 704-18, 2007 Dec 1.
"From the Mediterranean coast to the shores of Lake Ontario: CAPRI's premiere on the American continent.",
Proteins, vol. 69, issue 4, pp. 697-8, 2007 Dec 1.
"Identifying functional modules in the physical interactome of Saccharomyces cerevisiae.",
Proteomics, vol. 7, issue 6, pp. 944-60, 2007 Mar.
"GenePro: a Cytoscape plug-in for advanced visualization and analysis of interaction networks.",
Bioinformatics, vol. 22, issue 17, pp. 2178-9, 2006 Sep 1.
"Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures.",
Proteins, vol. 60, issue 2, pp. 150-69, 2005 Aug 1.
"Assessment of blind predictions of protein-protein interactions: current status of docking methods.",
Proteins, vol. 52, issue 1, pp. 51-67, 2003 Jul 1.