Publications

Found 49 results
Filters: Keyword is Hydrogen Bonding  [Clear All Filters]
2016
Lafaye, C., I. Van Molle, V. Tamu Dufe, K. Wahni, A. Boudier, P. Leroy, J-F. Collet, and J. Messens, "Sulfur Denitrosylation by an Engineered Trx-like DsbG Enzyme Identifies Nucleophilic Cysteine Hydrogen Bonds as Key Functional Determinant.", J Biol Chem, vol. 291, issue 29, pp. 15020-8, 2016 07 15.
2014
Van Laer, K., M. Oliveira, K. Wahni, and J. Messens, "The concerted action of a positive charge and hydrogen bonds dynamically regulates the pKa of the nucleophilic cysteine in the NrdH-redoxin family.", Protein Sci, vol. 23, issue 2, pp. 238-42, 2014 Feb.
2013
Ceregido Pérez, M de los Á., A. Garcia-Pino, J. L. Ortega-Roldan, S. Casares, O. López Mayorga, J. Bravo, N. A. J. van Nuland, and A. I. Azuaga, "Multimeric and differential binding of CIN85/CD2AP with two atypical proline-rich sequences from CD2 and Cbl-b*.", FEBS J, vol. 280, issue 14, pp. 3399-415, 2013 Jul.
Krylov, N. A., V. M. Pentkovsky, and R. G. Efremov, "Nontrivial behavior of water in the vicinity and inside lipid bilayers as probed by molecular dynamics simulations.", ACS Nano, vol. 7, issue 10, pp. 9428-42, 2013 Oct 22.
Roos, G., N. Foloppe, and J. Messens, "Understanding the pK(a) of redox cysteines: the key role of hydrogen bonding.", Antioxid Redox Signal, vol. 18, issue 1, pp. 94-127, 2013 Jan 01.
2012
Dey, S., A. Pal, M. Guharoy, S. Sonavane, and P. Chakrabarti, "Characterization and prediction of the binding site in DNA-binding proteins: improvement of accuracy by combining residue composition, evolutionary conservation and structural parameters.", Nucleic Acids Res, vol. 40, issue 15, pp. 7150-61, 2012 Aug.
2009
Guharoy, M., and P. Chakrabarti, "Empirical estimation of the energetic contribution of individual interface residues in structures of protein-protein complexes.", J Comput Aided Mol Des, vol. 23, issue 9, pp. 645-54, 2009 Sep.
2008
Goeminne, A., M. Berg, M. McNaughton, G. Bal, G. Surpateanu, P. Van der Veken, S. De Prol, W. Versées, J. Steyaert, A. Haemers, et al., "N-Arylmethyl substituted iminoribitol derivatives as inhibitors of a purine specific nucleoside hydrolase.", Bioorg Med Chem, vol. 16, issue 14, pp. 6752-63, 2008 Jul 15.
Sirota, F. L., S. Héry-Huynh, S. Maurer-Stroh, and S. J. Wodak, "Role of the amino acid sequence in domain swapping of the B1 domain of protein G.", Proteins, vol. 72, issue 1, pp. 88-104, 2008 Jul.
Kiss, A. L., A. Palló, G. Náray-Szabó, V. Harmat, and L. Polgár, "Structural and kinetic contributions of the oxyanion binding site to the catalytic activity of acylaminoacyl peptidase.", J Struct Biol, vol. 162, issue 2, pp. 312-23, 2008 May.
2007
Roos, G., A. Garcia-Pino, K. Van Belle, E. Brosens, K. Wahni, G. Vandenbussche, L. Wyns, R. Loris, and J. Messens, "The conserved active site proline determines the reducing power of Staphylococcus aureus thioredoxin.", J Mol Biol, vol. 368, issue 3, pp. 800-11, 2007 May 4.
2006
Sibille, N., A. Favier, A. I. Azuaga, G. Ganshaw, R. Bott, A. M. J. J. Bonvin, R. Boelens, and N. A. J. van Nuland, "Comparative NMR study on the impact of point mutations on protein stability of Pseudomonas mendocina lipase.", Protein Sci, vol. 15, issue 8, pp. 1915-27, 2006 Aug.
Moukhametzianov, R., J. P. Klare, R. G. Efremov, C. Baeken, A. Göppner, J. Labahn, M. Engelhard, G. Büldt, and V. I. Gordeliy, "Development of the signal in sensory rhodopsin and its transfer to the cognate transducer.", Nature, vol. 440, issue 7080, pp. 115-9, 2006 Mar 2.
2005
Azuaga, A. I., J. L. Neira, and N. A. J. van Nuland, "HPr as a model protein in structure, interaction, folding and stability studies.", Protein Pept Lett, vol. 12, issue 2, pp. 123-37, 2005 Feb.
Mignon, P., S. Loverix, J. Steyaert, and P. Geerlings, "Influence of the pi-pi interaction on the hydrogen bonding capacity of stacked DNA/RNA bases.", Nucleic Acids Res, vol. 33, issue 6, pp. 1779-89, 2005.
Loverix, S., P. Geerlings, M. McNaughton, K. Augustyns, A. Vandemeulebroucke, J. Steyaert, and W. Versées, "Substrate-assisted leaving group activation in enzyme-catalyzed N-glycosidic bond cleavage.", J Biol Chem, vol. 280, issue 15, pp. 14799-802, 2005 Apr 15.
2004
De Genst, E., F. Handelberg, A. Van Meirhaeghe, S. Vynck, R. Loris, L. Wyns, and S. Muyldermans, "Chemical basis for the affinity maturation of a camel single domain antibody.", J Biol Chem, vol. 279, issue 51, pp. 53593-601, 2004 Dec 17.
De Vos, D., F. Van Petegem, H. Remaut, C. Legrain, N. Glansdorff, and J. Van Beeumen, "Crystal structure of T state aspartate carbamoyltransferase of the hyperthermophilic archaeon Sulfolobus acidocaldarius.", J Mol Biol, vol. 339, issue 4, pp. 887-900, 2004 Jun 11.
Giraldo, J., L. De Maria, and S. J. Wodak, "Shift in nucleotide conformational equilibrium contributes to increased rate of catalysis of GpAp versus GpA in barnase.", Proteins, vol. 56, issue 2, pp. 261-76, 2004 Aug 1.
2003
Buts, L., R. Loris, E. De Genst, S. Oscarson, M. Lahmann, J. Messens, E. Brosens, L. Wyns, H. De Greve, and J. Bouckaert, "Solving the phase problem for carbohydrate-binding proteins using selenium derivatives of their ligands: a case study involving the bacterial F17-G adhesin.", Acta Crystallogr D Biol Crystallogr, vol. 59, issue Pt 6, pp. 1012-5, 2003 Jun.
Loris, R., D. Tielker, K-E. Jaeger, and L. Wyns, "Structural basis of carbohydrate recognition by the lectin LecB from Pseudomonas aeruginosa.", J Mol Biol, vol. 331, issue 4, pp. 861-70, 2003 Aug 22.
2002
Ogata, K., and S. J. Wodak, "Conserved water molecules in MHC class-I molecules and their putative structural and functional roles.", Protein Eng, vol. 15, issue 8, pp. 697-705, 2002 Aug.
Mignon, P., J. Steyaert, R. Loris, P. Geerlings, and S. Loverix, "A nucleophile activation dyad in ribonucleases. A combined X-ray crystallographic/ab initio quantum chemical study.", J Biol Chem, vol. 277, issue 39, pp. 36770-4, 2002 Sep 27.
Pajon, A., W. F. Vranken, M. Angeles Jimenez, M. Rico, and S. J. Wodak, "Pescador: the PEptides in Solution ConformAtion Database: Online Resource.", J Biomol NMR, vol. 23, issue 2, pp. 85-102, 2002 Jun.
2001
Martins, J. C., M. Enassar, R. Willem, J. M. Wieruzeski, G. Lippens, and S. J. Wodak, "Solution structure of the main alpha-amylase inhibitor from amaranth seeds.", Eur J Biochem, vol. 268, issue 8, pp. 2379-89, 2001 Apr.

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