Publications

Found 22 results
Filters: Keyword is Sequence Analysis, Protein  [Clear All Filters]
2017
Nguyen, H. Huy, Varadi M., Tompa P., and Pauwels K., "Affinity purification of human m-calpain through an intrinsically disordered inhibitor, calpastatin.", PLoS One, vol. 12, issue 3, pp. e0174125, 2017.
2016
Wijckmans, E., Nys M., Debaveye S., Brams M., Pardon E., Willegems K., Bertrand D., Steyaert J., Efremov R. G., and Ulens C., "Functional and Biochemical Characterization of Alvinella pompejana Cys-Loop Receptor Homologues.", PLoS One, vol. 11, issue 3, pp. e0151183, 2016.
Pancsa, R., Varadi M., Tompa P., and Vranken W. F., "Start2Fold: a database of hydrogen/deuterium exchange data on protein folding and stability.", Nucleic Acids Res, vol. 44, issue D1, pp. D429-34, 2016 Jan 04.
2015
Pedre, B., Van Molle I., Villadangos A. F., Wahni K., Vertommen D., Turell L., Erdogan H., Mateos L. M., and Messens J., "The Corynebacterium glutamicum mycothiol peroxidase is a reactive oxygen species-scavenging enzyme that shows promiscuity in thiol redox control.", Mol Microbiol, vol. 96, issue 6, pp. 1176-91, 2015 Jun.
Varadi, M., Guharoy M., Zsolyomi F., and Tompa P., "DisCons: a novel tool to quantify and classify evolutionary conservation of intrinsic protein disorder.", BMC Bioinformatics, vol. 16, pp. 153, 2015 May 13.
2014
Cilia, E., Pancsa R., Tompa P., Lenaerts T., and Vranken W. F., "The DynaMine webserver: predicting protein dynamics from sequence.", Nucleic Acids Res, vol. 42, issue Web Server issue, pp. W264-70, 2014 Jul.
2012
Velankar, S., Alhroub Y., Best C., Caboche S., Conroy M. J., Dana J. M., Montecelo M. A. Fernande, van Ginkel G., Golovin A., Gore S. P., et al., "PDBe: Protein Data Bank in Europe.", Nucleic Acids Res, vol. 40, issue Database issue, pp. D445-52, 2012 Jan.
2011
Velankar, S., Alhroub Y., Alili A., Best C., Boutselakis H. C., Caboche S., Conroy M. J., Dana J. M., van Ginkel G., Golovin A., et al., "PDBe: Protein Data Bank in Europe.", Nucleic Acids Res, vol. 39, issue Database issue, pp. D402-10, 2011 Jan.
Hegyi, H., Kalmar L., Horvath T., and Tompa P., "Verification of alternative splicing variants based on domain integrity, truncation length and intrinsic protein disorder.", Nucleic Acids Res, vol. 39, issue 4, pp. 1208-19, 2011 Mar.
2010
Guharoy, M., and Chakrabarti P., "Conserved residue clusters at protein-protein interfaces and their use in binding site identification.", BMC Bioinformatics, vol. 11, pp. 286, 2010.
Santos, M. A., Turinsky A. L., Ong S., Tsai J., Berger M. F., Badis G., Talukder S., Gehrke A. R., Bulyk M. L., Hughes T. R., et al., "Objective sequence-based subfamily classifications of mouse homeodomains reflect their in vitro DNA-binding preferences.", Nucleic Acids Res, vol. 38, issue 22, pp. 7927-42, 2010 Dec.
2008
Vertommen, D., Depuydt M., Pan J., Leverrier P., Knoops L., Szikora J-P., Messens J., Bardwell J. C. A., and Collet J-F., "The disulphide isomerase DsbC cooperates with the oxidase DsbA in a DsbD-independent manner.", Mol Microbiol, vol. 67, issue 2, pp. 336-49, 2008 Jan.
Hegyi, H., and Tompa P., "Intrinsically disordered proteins display no preference for chaperone binding in vivo.", PLoS Comput Biol, vol. 4, issue 3, pp. e1000017, 2008 Mar.
Tusnády, G. E., Kalmar L., Hegyi H., Tompa P., and Simon I., "TOPDOM: database of domains and motifs with conservative location in transmembrane proteins.", Bioinformatics, vol. 24, issue 12, pp. 1469-70, 2008 Jun 15.
2007
Fuxreiter, M., Tompa P., and Simon I., "Local structural disorder imparts plasticity on linear motifs.", Bioinformatics, vol. 23, issue 8, pp. 950-6, 2007 Apr 15.
Dessailly, B. H., Lensink M. F., and Wodak S. J., "Relating destabilizing regions to known functional sites in proteins.", BMC Bioinformatics, vol. 8, pp. 141, 2007.
Guharoy, M., and Chakrabarti P., "Secondary structure based analysis and classification of biological interfaces: identification of binding motifs in protein-protein interactions.", Bioinformatics, vol. 23, issue 15, pp. 1909-18, 2007 Aug 1.
2005
Güldener, U., Münsterkötter M., Kastenmüller G., Strack N., van Helden J., Lemer C., Richelles J., Wodak S. J., García-Martínez J., Pérez-Ortín J. E., et al., "CYGD: the Comprehensive Yeast Genome Database.", Nucleic Acids Res, vol. 33, issue Database issue, pp. D364-8, 2005 Jan 1.
Dosztányi, Z., Csizmok V., Tompa P., and Simon I., "IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content.", Bioinformatics, vol. 21, issue 16, pp. 3433-4, 2005 Aug 15.
2004
Friedrich, P., Papp H., Halasy K., Farkas A., Farkas B., Tompa P., and Kása P., "Differential distribution of calpain small subunit 1 and 2 in rat brain.", Eur J Neurosci, vol. 19, issue 7, pp. 1819-25, 2004 Apr.
Wodak, S. J., and Méndez R., "Prediction of protein-protein interactions: the CAPRI experiment, its evaluation and implications.", Curr Opin Struct Biol, vol. 14, issue 2, pp. 242-9, 2004 Apr.
2002
Ochagavia, M. Elena, Richelle J., and Wodak S. J., "Advanced pairwise structure alignments of proteins and analysis of conformational changes.", Bioinformatics, vol. 18, issue 4, pp. 637-40, 2002 Apr.