Publications

Found 14 results
Filters: Keyword is Saccharomyces cerevisiae Proteins and Author is Shoshana J Wodak  [Clear All Filters]
2015
Pu, S., J. Vlasblom, A. Turinsky, E. Marcon, S. Phanse, S. Smiley Trimble, J. Olsen, J. Greenblatt, A. Emili, and S. J. Wodak, "Extracting high confidence protein interactions from affinity purification data: at the crossroads.", J Proteomics, vol. 118, pp. 63-80, 2015 Apr 06.
2012
Babu, M., J. Vlasblom, S. Pu, X. Guo, C. Graham, B. D. M. Bean, H. E. Burston, F. J. Vizeacoumar, J. Snider, S. Phanse, et al., "Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae.", Nature, vol. 489, issue 7417, pp. 585-9, 2012 Sep 27.
2011
Turinsky, A. L., S. Razick, B. Turner, I. M. Donaldson, and S. J. Wodak, "Interaction databases on the same page.", Nat Biotechnol, vol. 29, issue 5, pp. 391-3, 2011 May.
2010
Lensink, M. F., and S. J. Wodak, "Docking and scoring protein interactions: CAPRI 2009.", Proteins, vol. 78, issue 15, pp. 3073-84, 2010 Nov 15.
Pu, S., A. L. Turinsky, J. Vlasblom, T. On, X. Xiong, A. Emili, Z. Zhang, J. Greenblatt, J. Parkinson, and S. J. Wodak, "Expanding the landscape of chromatin modification (CM)-related functional domains and genes in human.", PLoS One, vol. 5, issue 11, pp. e14122, 2010.
2009
Wodak, S. J., S. Pu, J. Vlasblom, and B. Séraphin, "Challenges and rewards of interaction proteomics.", Mol Cell Proteomics, vol. 8, issue 1, pp. 3-18, 2009 Jan.
Pu, S., J. Wong, B. Turner, E. Cho, and S. J. Wodak, "Up-to-date catalogues of yeast protein complexes.", Nucleic Acids Res, vol. 37, issue 3, pp. 825-31, 2009 Feb.
2008
Pu, S., K. Ronen, J. Vlasblom, J. Greenblatt, and S. J. Wodak, "Local coherence in genetic interaction patterns reveals prevalent functional versatility.", Bioinformatics, vol. 24, issue 20, pp. 2376-83, 2008 Oct 15.
2007
Pu, S., J. Vlasblom, A. Emili, J. Greenblatt, and S. J. Wodak, "Identifying functional modules in the physical interactome of Saccharomyces cerevisiae.", Proteomics, vol. 7, issue 6, pp. 944-60, 2007 Mar.
2006
Krogan, N. J., G. Cagney, H. Yu, G. Zhong, X. Guo, A. Ignatchenko, J. Li, S. Pu, N. Datta, A. P. Tikuisis, et al., "Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.", Nature, vol. 440, issue 7084, pp. 637-43, 2006 Mar 30.
Simonis, N., D. Gonze, C. Orsi, J. van Helden, and S. J. Wodak, "Modularity of the transcriptional response of protein complexes in yeast.", J Mol Biol, vol. 363, issue 2, pp. 589-610, 2006 Oct 20.
2005
Güldener, U., M. Münsterkötter, G. Kastenmüller, N. Strack, J. van Helden, C. Lemer, J. Richelles, S. J. Wodak, J. García-Martínez, J. E. Pérez-Ortín, et al., "CYGD: the Comprehensive Yeast Genome Database.", Nucleic Acids Res, vol. 33, issue Database issue, pp. D364-8, 2005 Jan 1.
2004
Simonis, N., S. J. Wodak, G. N. Cohen, and J. van Helden, "Combining pattern discovery and discriminant analysis to predict gene co-regulation.", Bioinformatics, vol. 20, issue 15, pp. 2370-9, 2004 Oct 12.
Simonis, N., J. van Helden, G. N. Cohen, and S. J. Wodak, "Transcriptional regulation of protein complexes in yeast.", Genome Biol, vol. 5, issue 5, pp. R33, 2004.