Publications
Found 56 results
Filters: Keyword is Models, Molecular and Author is Shoshana J Wodak [Clear All Filters]
"Landscape of intertwined associations in multi-domain homo-oligomeric proteins.",
J Mol Biol, vol. 427, issue 2, pp. 350-70, 2015 Jan 30.
"Blind prediction of interfacial water positions in CAPRI.",
Proteins, vol. 82, issue 4, pp. 620-32, 2014 Apr.
"Score_set: a CAPRI benchmark for scoring protein complexes.",
Proteins, vol. 82, issue 11, pp. 3163-9, 2014 Nov.
"Intertwined associations in structures of homooligomeric proteins.",
Structure, vol. 21, issue 4, pp. 638-49, 2013 Apr 2.
"Community-wide assessment of protein-interface modeling suggests improvements to design methodology.",
J Mol Biol, vol. 414, issue 2, pp. 289-302, 2011 Nov 25.
"Multiple replica repulsion technique for efficient conformational sampling of biological systems.",
Biophys J, vol. 101, issue 4, pp. 951-60, 2011 Aug 17.
"Blind predictions of protein interfaces by docking calculations in CAPRI.",
Proteins, vol. 78, issue 15, pp. 3085-95, 2010 Nov 15.
"Docking and scoring protein interactions: CAPRI 2009.",
Proteins, vol. 78, issue 15, pp. 3073-84, 2010 Nov 15.
"Role of the amino acid sequence in domain swapping of the B1 domain of protein G.",
Proteins, vol. 72, issue 1, pp. 88-104, 2008 Jul.
"Relating destabilizing regions to known functional sites in proteins.",
BMC Bioinformatics, vol. 8, pp. 141, 2007.
"Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures.",
Proteins, vol. 60, issue 2, pp. 150-69, 2005 Aug 1.
"Computational protein design is a challenge for implicit solvation models.",
Biophys J, vol. 88, issue 1, pp. 156-71, 2005 Jan.
"Prediction of protein-protein interactions: the CAPRI experiment, its evaluation and implications.",
Curr Opin Struct Biol, vol. 14, issue 2, pp. 242-9, 2004 Apr.
"Shift in nucleotide conformational equilibrium contributes to increased rate of catalysis of GpAp versus GpA in barnase.",
Proteins, vol. 56, issue 2, pp. 261-76, 2004 Aug 1.
"Assessment of blind predictions of protein-protein interactions: current status of docking methods.",
Proteins, vol. 52, issue 1, pp. 51-67, 2003 Jul 1.
"CAPRI: a Critical Assessment of PRedicted Interactions.",
Proteins, vol. 52, issue 1, pp. 2-9, 2003 Jul 1.
"Identifying structural domains in proteins.",
Methods Biochem Anal, vol. 44, pp. 365-85, 2003.
"Advanced pairwise structure alignments of proteins and analysis of conformational changes.",
Bioinformatics, vol. 18, issue 4, pp. 637-40, 2002 Apr.
"Conserved water molecules in MHC class-I molecules and their putative structural and functional roles.",
Protein Eng, vol. 15, issue 8, pp. 697-705, 2002 Aug.
"Protein modules and protein-protein interaction. Introduction.",
Adv Protein Chem, vol. 61, pp. 1-8, 2002.
"Structural basis of macromolecular recognition.",
Adv Protein Chem, vol. 61, pp. 9-73, 2002.
"Automatic procedures for protein design.",
Comb Chem High Throughput Screen, vol. 4, issue 8, pp. 643-59, 2001 Dec.
"Checking nucleic acid crystal structures.",
Acta Crystallogr D Biol Crystallogr, vol. 57, issue Pt 6, pp. 813-28, 2001 Jun.
"A conserved Asn in transmembrane helix 7 is an on/off switch in the activation of the thyrotropin receptor.",
J Biol Chem, vol. 276, issue 25, pp. 22991-9, 2001 Jun 22.
"Solution structure of the main alpha-amylase inhibitor from amaranth seeds.",
Eur J Biochem, vol. 268, issue 8, pp. 2379-89, 2001 Apr.