Publications

Found 51 results
Filters: Keyword is Databases, Protein  [Clear All Filters]
2016
Pancsa, R., M. Varadi, P. Tompa, and W. F. Vranken, "Start2Fold: a database of hydrogen/deuterium exchange data on protein folding and stability.", Nucleic Acids Res, vol. 44, issue D1, pp. D429-34, 2016 Jan 04.
2015
Tusnády, G. E., L. Dobson, and P. Tompa, "Disordered regions in transmembrane proteins.", Biochim Biophys Acta, vol. 1848, issue 11 Pt A, pp. 2839-48, 2015 Nov.
Pu, S., J. Vlasblom, A. Turinsky, E. Marcon, S. Phanse, S. Smiley Trimble, J. Olsen, J. Greenblatt, A. Emili, and S. J. Wodak, "Extracting high confidence protein interactions from affinity purification data: at the crossroads.", J Proteomics, vol. 118, pp. 63-80, 2015 Apr 06.
Mackinnon, S. S., and S. J. Wodak, "Landscape of intertwined associations in multi-domain homo-oligomeric proteins.", J Mol Biol, vol. 427, issue 2, pp. 350-70, 2015 Jan 30.
Varadi, M., and P. Tompa, "The Protein Ensemble Database.", Adv Exp Med Biol, vol. 870, pp. 335-49, 2015.
2014
Turinsky, A. L., S. Razick, B. Turner, I. M. Donaldson, and S. J. Wodak, "Navigating the global protein-protein interaction landscape using iRefWeb.", Methods Mol Biol, vol. 1091, pp. 315-31, 2014.
Varadi, M., S. Kosol, P. Lebrun, E. Valentini, M. Blackledge, K. A Dunker, I. C. Felli, J. D. Forman-Kay, R. W. Kriwacki, R. Pierattelli, et al., "pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins.", Nucleic Acids Res, vol. 42, issue Database issue, pp. D326-35, 2014 Jan.
Lensink, M. F., and S. J. Wodak, "Score_set: a CAPRI benchmark for scoring protein complexes.", Proteins, vol. 82, issue 11, pp. 3163-9, 2014 Nov.
2013
Moretti, R., S. J. Fleishman, R. Agius, M. Torchala, P. A. Bates, P. L. Kastritis, J. P. G. L. M. Rodrigues, M. Trellet, A. M. J. J. Bonvin, M. Cui, et al., "Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.", Proteins, vol. 81, issue 11, pp. 1980-7, 2013 Nov.
Mackinnon, S. S., A. Malevanets, and S. J. Wodak, "Intertwined associations in structures of homooligomeric proteins.", Structure, vol. 21, issue 4, pp. 638-49, 2013 Apr 2.
Montelione, G. T., M. Nilges, A. Bax, P. Güntert, T. Herrmann, J. S. Richardson, C. D. Schwieters, W. F. Vranken, G. W. Vuister, D. S. Wishart, et al., "Recommendations of the wwPDB NMR Validation Task Force.", Structure, vol. 21, issue 9, pp. 1563-70, 2013 Sep 3.
2012
da Silva, A. W. Sousa, and W. F. Vranken, "ACPYPE - AnteChamber PYthon Parser interfacE.", BMC Res Notes, vol. 5, pp. 367, 2012.
Hegyi, H., and P. Tompa, "Increased structural disorder of proteins encoded on human sex chromosomes.", Mol Biosyst, vol. 8, issue 1, pp. 229-36, 2012 Jan.
Doreleijers, J. F., W. F. Vranken, C. Schulte, J. L. Markley, E. L. Ulrich, G. Vriend, and G. W. Vuister, "NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDB.", Nucleic Acids Res, vol. 40, issue Database issue, pp. D519-24, 2012 Jan.
Velankar, S., Y. Alhroub, C. Best, S. Caboche, M. J. Conroy, J. M. Dana, M. A. Fernande Montecelo, G. van Ginkel, A. Golovin, S. P. Gore, et al., "PDBe: Protein Data Bank in Europe.", Nucleic Acids Res, vol. 40, issue Database issue, pp. D445-52, 2012 Jan.
Tompa, P., "On the supertertiary structure of proteins.", Nat Chem Biol, vol. 8, issue 7, pp. 597-600, 2012 Jul.
2011
Bernard, A., W. F. Vranken, B. Bardiaux, M. Nilges, and T. E. Malliavin, "Bayesian estimation of NMR restraint potential and weight: a validation on a representative set of protein structures.", Proteins, vol. 79, issue 5, pp. 1525-37, 2011 May.
Wodak, S. J., J. Vlasblom, and S. Pu, "High-throughput analyses and curation of protein interactions in yeast.", Methods Mol Biol, vol. 759, pp. 381-406, 2011.
Turinsky, A. L., S. Razick, B. Turner, I. M. Donaldson, and S. J. Wodak, "Interaction databases on the same page.", Nat Biotechnol, vol. 29, issue 5, pp. 391-3, 2011 May.
Hao, Y., A. Merkoulovitch, J. Vlasblom, S. Pu, A. L. Turinsky, D. Roudeva, B. Turner, J. Greenblatt, and S. J. Wodak, "OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms.", Bioinformatics, vol. 27, issue 6, pp. 883-4, 2011 Mar 15.
Velankar, S., Y. Alhroub, A. Alili, C. Best, H. C. Boutselakis, S. Caboche, M. J. Conroy, J. M. Dana, G. van Ginkel, A. Golovin, et al., "PDBe: Protein Data Bank in Europe.", Nucleic Acids Res, vol. 39, issue Database issue, pp. D402-10, 2011 Jan.
Guharoy, M., A. Pal, M. Dasgupta, and P. Chakrabarti, "PRICE (PRotein Interface Conservation and Energetics): a server for the analysis of protein-protein interfaces.", J Struct Funct Genomics, vol. 12, issue 1, pp. 33-41, 2011 Mar.
Schad, E., P. Tompa, and H. Hegyi, "The relationship between proteome size, structural disorder and organism complexity.", Genome Biol, vol. 12, issue 12, pp. R120, 2011.
Sahakyan, A. B., W. F. Vranken, A. Cavalli, and M. Vendruscolo, "Structure-based prediction of methyl chemical shifts in proteins.", J Biomol NMR, vol. 50, issue 4, pp. 331-46, 2011 Aug.
Hegyi, H., L. Kalmar, T. Horvath, and P. Tompa, "Verification of alternative splicing variants based on domain integrity, truncation length and intrinsic protein disorder.", Nucleic Acids Res, vol. 39, issue 4, pp. 1208-19, 2011 Mar.

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