Publications

Found 13 results
Filters: Keyword is Databases, Protein and Author is Vranken, Wim F  [Clear All Filters]
2016
Pancsa, R., M. Varadi, P. Tompa, and W. F. Vranken, "Start2Fold: a database of hydrogen/deuterium exchange data on protein folding and stability.", Nucleic Acids Res, vol. 44, issue D1, pp. D429-34, 2016 Jan 04.
2013
Montelione, G. T., M. Nilges, A. Bax, P. Güntert, T. Herrmann, J. S. Richardson, C. D. Schwieters, W. F. Vranken, G. W. Vuister, D. S. Wishart, et al., "Recommendations of the wwPDB NMR Validation Task Force.", Structure, vol. 21, issue 9, pp. 1563-70, 2013 Sep 3.
2012
da Silva, A. W. Sousa, and W. F. Vranken, "ACPYPE - AnteChamber PYthon Parser interfacE.", BMC Res Notes, vol. 5, pp. 367, 2012.
Doreleijers, J. F., W. F. Vranken, C. Schulte, J. L. Markley, E. L. Ulrich, G. Vriend, and G. W. Vuister, "NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDB.", Nucleic Acids Res, vol. 40, issue Database issue, pp. D519-24, 2012 Jan.
2011
Bernard, A., W. F. Vranken, B. Bardiaux, M. Nilges, and T. E. Malliavin, "Bayesian estimation of NMR restraint potential and weight: a validation on a representative set of protein structures.", Proteins, vol. 79, issue 5, pp. 1525-37, 2011 May.
Velankar, S., Y. Alhroub, A. Alili, C. Best, H. C. Boutselakis, S. Caboche, M. J. Conroy, J. M. Dana, G. van Ginkel, A. Golovin, et al., "PDBe: Protein Data Bank in Europe.", Nucleic Acids Res, vol. 39, issue Database issue, pp. D402-10, 2011 Jan.
Sahakyan, A. B., W. F. Vranken, A. Cavalli, and M. Vendruscolo, "Structure-based prediction of methyl chemical shifts in proteins.", J Biomol NMR, vol. 50, issue 4, pp. 331-46, 2011 Aug.
2010
Penkett, C. J., G. van Ginkel, S. Velankar, J. G Swaminathan, E. L. Ulrich, S. Mading, T. J. Stevens, R. H. Fogh, A. Gutmanas, G. J. Kleywegt, et al., "Straightforward and complete deposition of NMR data to the PDBe.", J Biomol NMR, vol. 48, issue 2, pp. 85-92, 2010 Oct.
Rieping, W., and W. F. Vranken, "Validation of archived chemical shifts through atomic coordinates.", Proteins, vol. 78, issue 11, pp. 2482-9, 2010 Aug 15.
2009
Doreleijers, J. F., W. F. Vranken, C. Schulte, J. Lin, J. R. Wedell, C. J. Penkett, G. W. Vuister, G. Vriend, J. L. Markley, and E. L. Ulrich, "The NMR restraints grid at BMRB for 5,266 protein and nucleic acid PDB entries.", J Biomol NMR, vol. 45, issue 4, pp. 389-96, 2009 Dec.
Vranken, W. F., and W. Rieping, "Relationship between chemical shift value and accessible surface area for all amino acid atoms.", BMC Struct Biol, vol. 9, pp. 20, 2009.
2005
Vranken, W. F., W. Boucher, T. J. Stevens, R. H. Fogh, A. Pajon, M. Llinas, E. L. Ulrich, J. L. Markley, J. Ionides, and E. D. Laue, "The CCPN data model for NMR spectroscopy: development of a software pipeline.", Proteins, vol. 59, issue 4, pp. 687-96, 2005 Jun 1.
2002
Pajon, A., W. F. Vranken, M. Angeles Jimenez, M. Rico, and S. J. Wodak, "Pescador: the PEptides in Solution ConformAtion Database: Online Resource.", J Biomol NMR, vol. 23, issue 2, pp. 85-102, 2002 Jun.