Publications

Found 242 results
Filters: Keyword is Molecular Sequence Data  [Clear All Filters]
2016
Antonik, P. M., Volkov A., Broder U. N., Re D. Lo, van Nuland N. A. J., and Crowley P. B., "Anomer-Specific Recognition and Dynamics in a Fucose-Binding Lectin.", Biochemistry, vol. 55, issue 8, pp. 1195-203, 2016 Mar 01.
Hubin, E., Cioffi F., Rozenski J., van Nuland N. A. J., and Broersen K., "Characterization of insulin-degrading enzyme-mediated cleavage of Aβ in distinct aggregation states.", Biochim Biophys Acta, vol. 1860, issue 6, pp. 1281-90, 2016 Jun.
Guharoy, M., Bhowmick P., and Tompa P., "Design Principles Involving Protein Disorder Facilitate Specific Substrate Selection and Degradation by the Ubiquitin-Proteasome System.", J Biol Chem, vol. 291, issue 13, pp. 6723-31, 2016 Mar 25.
Wijckmans, E., Nys M., Debaveye S., Brams M., Pardon E., Willegems K., Bertrand D., Steyaert J., Efremov R. G., and Ulens C., "Functional and Biochemical Characterization of Alvinella pompejana Cys-Loop Receptor Homologues.", PLoS One, vol. 11, issue 3, pp. e0151183, 2016.
Piai, A., Calçada E. O., Tarenzi T., Del Grande A., Varadi M., Tompa P., Felli I. C., and Pierattelli R., "Just a Flexible Linker? The Structural and Dynamic Properties of CBP-ID4 Revealed by NMR Spectroscopy.", Biophys J, vol. 110, issue 2, pp. 372-81, 2016 Jan 19.
Sterckx, Y. G. - J., Jové T., Shkumatov A. V., Garcia-Pino A., Geerts L., De Kerpel M., Lah J., De Greve H., Van Melderen L., and Loris R., "A unique hetero-hexadecameric architecture displayed by the Escherichia coli O157 PaaA2-ParE2 antitoxin-toxin complex.", J Mol Biol, vol. 428, issue 8, pp. 1589-603, 2016 Apr 24.
2015
Bhowmick, P., Guharoy M., and Tompa P., "Bioinformatics Approaches for Predicting Disordered Protein Motifs.", Adv Exp Med Biol, vol. 870, pp. 291-318, 2015.
Tossounian, M-A., Pedre B., Wahni K., Erdogan H., Vertommen D., Van Molle I., and Messens J., "Corynebacterium diphtheriae methionine sulfoxide reductase a exploits a unique mycothiol redox relay mechanism.", J Biol Chem, vol. 290, issue 18, pp. 11365-75, 2015 May 01.
Pedre, B., Van Molle I., Villadangos A. F., Wahni K., Vertommen D., Turell L., Erdogan H., Mateos L. M., and Messens J., "The Corynebacterium glutamicum mycothiol peroxidase is a reactive oxygen species-scavenging enzyme that shows promiscuity in thiol redox control.", Mol Microbiol, vol. 96, issue 6, pp. 1176-91, 2015 Jun.
Varadi, M., Guharoy M., Zsolyomi F., and Tompa P., "DisCons: a novel tool to quantify and classify evolutionary conservation of intrinsic protein disorder.", BMC Bioinformatics, vol. 16, pp. 153, 2015 May 13.
Tompa, P., Schad E., Tantos Á., and Kalmar L., "Intrinsically disordered proteins: emerging interaction specialists.", Curr Opin Struct Biol, vol. 35, pp. 49-59, 2015 Dec.
Coppens, F., Iyyathurai J., Ruer S., Fioravanti A., Taganna J., Vereecke L., De Greve H., and Remaut H., "Structural and adhesive properties of the long polar fimbriae protein LpfD from adherent-invasive Escherichia coli.", Acta Crystallogr D Biol Crystallogr, vol. 71, issue Pt 8, pp. 1615-26, 2015 Aug.
Moonens, K., Van den Broeck I., De Kerpel M., Deboeck F., Raymaekers H., Remaut H., and De Greve H., "Structural and functional insight into the carbohydrate receptor binding of F4 fimbriae-producing enterotoxigenic Escherichia coli.", J Biol Chem, vol. 290, issue 13, pp. 8409-19, 2015 Mar 27.
Geertsma, E. R., Chang Y-N., Shaik F. R., Neldner Y., Pardon E., Steyaert J., and Dutzler R., "Structure of a prokaryotic fumarate transporter reveals the architecture of the SLC26 family.", Nat Struct Mol Biol, vol. 22, issue 10, pp. 803-8, 2015 Oct.
2014
Lee, C., Kalmar L., Xue B., Tompa P., Daughdrill G. W., Uversky V. N., and Han K-H., "Contribution of proline to the pre-structuring tendency of transient helical secondary structure elements in intrinsically disordered proteins.", Biochim Biophys Acta, vol. 1840, issue 3, pp. 993-1003, 2014 Mar.
Ehrnstorfer, I. A., Geertsma E. R., Pardon E., Steyaert J., and Dutzler R., "Crystal structure of a SLC11 (NRAMP) transporter reveals the basis for transition-metal ion transport.", Nat Struct Mol Biol, vol. 21, issue 11, pp. 990-6, 2014 Nov.
Sterckx, Y. G. J., Haesaerts S., Van Melderen L., and Loris R., "Crystallization and preliminary X-ray analysis of two variants of the Escherichia coli O157 ParE2-PaaA2 toxin-antitoxin complex.", Acta Crystallogr F Struct Biol Commun, vol. 70, issue Pt 9, pp. 1284-91, 2014 Sep.
Obishakin, E., Stijlemans B., Santi-Rocca J., Vandenberghe I., Devreese B., Muldermans S., Bastin P., and Magez S., "Generation of a nanobody targeting the paraflagellar rod protein of trypanosomes.", PLoS One, vol. 9, issue 12, pp. e115893, 2014.
De Meyer, T., Eeckhout D., De Rycke R., De Buck S., Muyldermans S., and Depicker A., "Generation of VHH antibodies against the Arabidopsis thaliana seed storage proteins.", Plant Mol Biol, vol. 84, issue 1-2, pp. 83-93, 2014 Jan.
Nunes-Silva, S., Gangnard S., Vidal M., Vuchelen A., Dechavanne S., Chan S., Pardon E., Steyaert J., Ramboarina S., Chêne A., et al., "Llama immunization with full-length VAR2CSA generates cross-reactive and inhibitory single-domain antibodies against the DBL1X domain.", Sci Rep, vol. 4, pp. 7373, 2014 Dec 09.
Tompa, P., Davey N. E., Gibson T. J., and M Babu M., "A million peptide motifs for the molecular biologist.", Mol Cell, vol. 55, issue 2, pp. 161-9, 2014 Jul 17.
Lo, A. W. H., Moonens K., De Kerpel M., Brys L., Pardon E., Remaut H., and De Greve H., "The molecular mechanism of Shiga toxin Stx2e neutralization by a single-domain antibody targeting the cell receptor-binding domain.", J Biol Chem, vol. 289, issue 36, pp. 25374-81, 2014 Sep 05.
Denoncin, K., Vertommen D., Arts I. S., Goemans C. V., Rahuel-Clermont S., Messens J., and Collet J-F., "A new role for Escherichia coli DsbC protein in protection against oxidative stress.", J Biol Chem, vol. 289, issue 18, pp. 12356-64, 2014 May 02.
Staus, D. P., Wingler L. M., Strachan R. T., Rasmussen S. G. F., Pardon E., Ahn S., Steyaert J., Kobilka B. K., and Lefkowitz R. J., "Regulation of β2-adrenergic receptor function by conformationally selective single-domain intrabodies.", Mol Pharmacol, vol. 85, issue 3, pp. 472-81, 2014 Mar.
Sterckx, Y. G. J., Volkov A., Vranken W. F., Kragelj J., Jensen M. Ringkjøbi, Buts L., Garcia-Pino A., Jové T., Van Melderen L., Blackledge M., et al., "Small-angle X-ray scattering- and nuclear magnetic resonance-derived conformational ensemble of the highly flexible antitoxin PaaA2.", Structure, vol. 22, issue 6, pp. 854-65, 2014 Jun 10.

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