Publications

Found 17 results
Filters: Keyword is User-Computer Interface  [Clear All Filters]
2015
Varadi, M., and P. Tompa, "The Protein Ensemble Database.", Adv Exp Med Biol, vol. 870, pp. 335-49, 2015.
2012
da Silva, A. W. Sousa, and W. F. Vranken, "ACPYPE - AnteChamber PYthon Parser interfacE.", BMC Res Notes, vol. 5, pp. 367, 2012.
Doreleijers, J. F., A. W. Sousa da Silva, E. Krieger, S. B. Nabuurs, C. A. E. M. Spronk, T. J. Stevens, W. F. Vranken, G. Vriend, and G. W. Vuister, "CING: an integrated residue-based structure validation program suite.", J Biomol NMR, vol. 54, issue 3, pp. 267-83, 2012 Nov.
2011
Hao, Y., A. Merkoulovitch, J. Vlasblom, S. Pu, A. L. Turinsky, D. Roudeva, B. Turner, J. Greenblatt, and S. J. Wodak, "OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms.", Bioinformatics, vol. 27, issue 6, pp. 883-4, 2011 Mar 15.
Velankar, S., Y. Alhroub, A. Alili, C. Best, H. C. Boutselakis, S. Caboche, M. J. Conroy, J. M. Dana, G. van Ginkel, A. Golovin, et al., "PDBe: Protein Data Bank in Europe.", Nucleic Acids Res, vol. 39, issue Database issue, pp. D402-10, 2011 Jan.
Guharoy, M., A. Pal, M. Dasgupta, and P. Chakrabarti, "PRICE (PRotein Interface Conservation and Energetics): a server for the analysis of protein-protein interfaces.", J Struct Funct Genomics, vol. 12, issue 1, pp. 33-41, 2011 Mar.
2010
Turner, B., S. Razick, A. L. Turinsky, J. Vlasblom, E. K. Crowdy, E. Cho, K. Morrison, I. M. Donaldson, and S. J. Wodak, "iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence.", Database (Oxford), vol. 2010, pp. baq023, 2010.
Penkett, C. J., G. van Ginkel, S. Velankar, J. G Swaminathan, E. L. Ulrich, S. Mading, T. J. Stevens, R. H. Fogh, A. Gutmanas, G. J. Kleywegt, et al., "Straightforward and complete deposition of NMR data to the PDBe.", J Biomol NMR, vol. 48, issue 2, pp. 85-92, 2010 Oct.
2008
Dessailly, B. H., M. F. Lensink, C. A. Orengo, and S. J. Wodak, "LigASite--a database of biologically relevant binding sites in proteins with known apo-structures.", Nucleic Acids Res, vol. 36, issue Database issue, pp. D667-73, 2008 Jan.
Tusnády, G. E., L. Kalmar, H. Hegyi, P. Tompa, and I. Simon, "TOPDOM: database of domains and motifs with conservative location in transmembrane proteins.", Bioinformatics, vol. 24, issue 12, pp. 1469-70, 2008 Jun 15.
2007
Sickmeier, M., J. A. Hamilton, T. LeGall, V. Vacic, M. S. Cortese, Á. Tantos, B. Szabo, P. Tompa, J. Chen, V. N. Uversky, et al., "DisProt: the Database of Disordered Proteins.", Nucleic Acids Res, vol. 35, issue Database issue, pp. D786-93, 2007 Jan.
2006
Vlasblom, J., S. Wu, S. Pu, M. Superina, G. Liu, C. Orsi, and S. J. Wodak, "GenePro: a Cytoscape plug-in for advanced visualization and analysis of interaction networks.", Bioinformatics, vol. 22, issue 17, pp. 2178-9, 2006 Sep 1.
2005
Güldener, U., M. Münsterkötter, G. Kastenmüller, N. Strack, J. van Helden, C. Lemer, J. Richelles, S. J. Wodak, J. García-Martínez, J. E. Pérez-Ortín, et al., "CYGD: the Comprehensive Yeast Genome Database.", Nucleic Acids Res, vol. 33, issue Database issue, pp. D364-8, 2005 Jan 1.
Croes, D., F. Couche, S. J. Wodak, and J. van Helden, "Metabolic PathFinding: inferring relevant pathways in biochemical networks.", Nucleic Acids Res, vol. 33, issue Web Server issue, pp. W326-30, 2005 Jul 1.
2004
Leplae, R., A. Hebrant, S. J. Wodak, and A. Toussaint, "ACLAME: a CLAssification of Mobile genetic Elements.", Nucleic Acids Res, vol. 32, issue Database issue, pp. D45-9, 2004 Jan 1.
Lemer, C., E. Antezana, F. Couche, F. Fays, X. Santolaria, R's. Janky, Y. Deville, J. Richelle, and S. J. Wodak, "The aMAZE LightBench: a web interface to a relational database of cellular processes.", Nucleic Acids Res, vol. 32, issue Database issue, pp. D443-8, 2004 Jan 1.
2002
Ochagavia, M. Elena, J. Richelle, and S. J. Wodak, "Advanced pairwise structure alignments of proteins and analysis of conformational changes.", Bioinformatics, vol. 18, issue 4, pp. 637-40, 2002 Apr.