Publications

Found 16 results
Filters: Keyword is Saccharomyces cerevisiae and Author is Shoshana J Wodak  [Clear All Filters]
2015
Pu, S., J. Vlasblom, A. Turinsky, E. Marcon, S. Phanse, S. Smiley Trimble, J. Olsen, J. Greenblatt, A. Emili, and S. J. Wodak, "Extracting high confidence protein interactions from affinity purification data: at the crossroads.", J Proteomics, vol. 118, pp. 63-80, 2015 Apr 06.
2012
Babu, M., J. Vlasblom, S. Pu, X. Guo, C. Graham, B. D. M. Bean, H. E. Burston, F. J. Vizeacoumar, J. Snider, S. Phanse, et al., "Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae.", Nature, vol. 489, issue 7417, pp. 585-9, 2012 Sep 27.
2011
Turinsky, A. L., B. Turner, R. C. Borja, J. A. Gleeson, M. Heath, S. Pu, T. Switzer, D. Dong, Y. Gong, T. On, et al., "DAnCER: disease-annotated chromatin epigenetics resource.", Nucleic Acids Res, vol. 39, issue Database issue, pp. D889-94, 2011 Jan.
Wodak, S. J., J. Vlasblom, and S. Pu, "High-throughput analyses and curation of protein interactions in yeast.", Methods Mol Biol, vol. 759, pp. 381-406, 2011.
Turinsky, A. L., S. Razick, B. Turner, I. M. Donaldson, and S. J. Wodak, "Interaction databases on the same page.", Nat Biotechnol, vol. 29, issue 5, pp. 391-3, 2011 May.
2010
On, T., X. Xiong, S. Pu, A. Turinsky, Y. Gong, A. Emili, Z. Zhang, J. Greenblatt, S. J. Wodak, and J. Parkinson, "The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses.", Proteins, vol. 78, issue 9, pp. 2075-89, 2010 Jul.
2009
Wodak, S. J., S. Pu, J. Vlasblom, and B. Séraphin, "Challenges and rewards of interaction proteomics.", Mol Cell Proteomics, vol. 8, issue 1, pp. 3-18, 2009 Jan.
Vlasblom, J., and S. J. Wodak, "Markov clustering versus affinity propagation for the partitioning of protein interaction graphs.", BMC Bioinformatics, vol. 10, pp. 99, 2009.
2008
Pu, S., K. Ronen, J. Vlasblom, J. Greenblatt, and S. J. Wodak, "Local coherence in genetic interaction patterns reveals prevalent functional versatility.", Bioinformatics, vol. 24, issue 20, pp. 2376-83, 2008 Oct 15.
2006
Krogan, N. J., G. Cagney, H. Yu, G. Zhong, X. Guo, A. Ignatchenko, J. Li, S. Pu, N. Datta, A. P. Tikuisis, et al., "Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.", Nature, vol. 440, issue 7084, pp. 637-43, 2006 Mar 30.
Croes, D., F. Couche, S. J. Wodak, and J. van Helden, "Inferring meaningful pathways in weighted metabolic networks.", J Mol Biol, vol. 356, issue 1, pp. 222-36, 2006 Feb 10.
Simonis, N., D. Gonze, C. Orsi, J. van Helden, and S. J. Wodak, "Modularity of the transcriptional response of protein complexes in yeast.", J Mol Biol, vol. 363, issue 2, pp. 589-610, 2006 Oct 20.
2005
Güldener, U., M. Münsterkötter, G. Kastenmüller, N. Strack, J. van Helden, C. Lemer, J. Richelles, S. J. Wodak, J. García-Martínez, J. E. Pérez-Ortín, et al., "CYGD: the Comprehensive Yeast Genome Database.", Nucleic Acids Res, vol. 33, issue Database issue, pp. D364-8, 2005 Jan 1.
2004
Simonis, N., S. J. Wodak, G. N. Cohen, and J. van Helden, "Combining pattern discovery and discriminant analysis to predict gene co-regulation.", Bioinformatics, vol. 20, issue 15, pp. 2370-9, 2004 Oct 12.
Simonis, N., J. van Helden, G. N. Cohen, and S. J. Wodak, "Transcriptional regulation of protein complexes in yeast.", Genome Biol, vol. 5, issue 5, pp. R33, 2004.
2002
van Helden, J., L. Wernisch, D. Gilbert, and S. J. Wodak, "Graph-based analysis of metabolic networks.", Ernst Schering Res Found Workshop, issue 38, pp. 245-74, 2002.