Publications

Found 23 results
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2015
Tusnády, G. E., L. Dobson, and P. Tompa, "Disordered regions in transmembrane proteins.", Biochim Biophys Acta, vol. 1848, issue 11 Pt A, pp. 2839-48, 2015 Nov.
2014
Cilia, E., R. Pancsa, P. Tompa, T. Lenaerts, and W. F. Vranken, "The DynaMine webserver: predicting protein dynamics from sequence.", Nucleic Acids Res, vol. 42, issue Web Server issue, pp. W264-70, 2014 Jul.
Varadi, M., S. Kosol, P. Lebrun, E. Valentini, M. Blackledge, K. A Dunker, I. C. Felli, J. D. Forman-Kay, R. W. Kriwacki, R. Pierattelli, et al., "pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins.", Nucleic Acids Res, vol. 42, issue Database issue, pp. D326-35, 2014 Jan.
Polyansky, A. A., A. O. Chugunov, P. E. Volynsky, N. A. Krylov, D. E. Nolde, and R. G. Efremov, "PREDDIMER: a web server for prediction of transmembrane helical dimers.", Bioinformatics, vol. 30, issue 6, pp. 889-90, 2014 Mar 15.
Lensink, M. F., and S. J. Wodak, "Score_set: a CAPRI benchmark for scoring protein complexes.", Proteins, vol. 82, issue 11, pp. 3163-9, 2014 Nov.
2012
Fiume, M., E. J. M. Smith, A. Brook, D. Strbenac, B. Turner, A. M. Mezlini, M. D. Robinson, S. J. Wodak, and M. Brudno, "Savant Genome Browser 2: visualization and analysis for population-scale genomics.", Nucleic Acids Res, vol. 40, issue Web Server issue, pp. W615-21, 2012 Jul.
Wodak, S. J., D. Mietchen, A. M. Collings, R. B. Russell, and P. E. Bourne, "Topic pages: PLoS Computational Biology meets Wikipedia.", PLoS Comput Biol, vol. 8, issue 3, pp. e1002446, 2012.
2011
Turinsky, A. L., S. Razick, B. Turner, I. M. Donaldson, and S. J. Wodak, "Interaction databases on the same page.", Nat Biotechnol, vol. 29, issue 5, pp. 391-3, 2011 May.
Guharoy, M., A. Pal, M. Dasgupta, and P. Chakrabarti, "PRICE (PRotein Interface Conservation and Energetics): a server for the analysis of protein-protein interfaces.", J Struct Funct Genomics, vol. 12, issue 1, pp. 33-41, 2011 Mar.
2010
Lensink, M. F., and S. J. Wodak, "Docking and scoring protein interactions: CAPRI 2009.", Proteins, vol. 78, issue 15, pp. 3073-84, 2010 Nov 15.
Turner, B., S. Razick, A. L. Turinsky, J. Vlasblom, E. K. Crowdy, E. Cho, K. Morrison, I. M. Donaldson, and S. J. Wodak, "iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence.", Database (Oxford), vol. 2010, pp. baq023, 2010.
Turinsky, A. L., S. Razick, B. Turner, I. M. Donaldson, and S. J. Wodak, "Literature curation of protein interactions: measuring agreement across major public databases.", Database (Oxford), vol. 2010, pp. baq026, 2010.
Velankar, S., C. Best, B. Beuth, C. H. Boutselakis, N. Cobley, A. W. Sousa Da Silva, D. Dimitropoulos, A. Golovin, M. Hirshberg, M. John, et al., "PDBe: Protein Data Bank in Europe.", Nucleic Acids Res, vol. 38, issue Database issue, pp. D308-17, 2010 Jan.
2009
Pu, S., J. Wong, B. Turner, E. Cho, and S. J. Wodak, "Up-to-date catalogues of yeast protein complexes.", Nucleic Acids Res, vol. 37, issue 3, pp. 825-31, 2009 Feb.
2008
Dessailly, B. H., M. F. Lensink, C. A. Orengo, and S. J. Wodak, "LigASite--a database of biologically relevant binding sites in proteins with known apo-structures.", Nucleic Acids Res, vol. 36, issue Database issue, pp. D667-73, 2008 Jan.
2007
Sickmeier, M., J. A. Hamilton, T. LeGall, V. Vacic, M. S. Cortese, Á. Tantos, B. Szabo, P. Tompa, J. Chen, V. N. Uversky, et al., "DisProt: the Database of Disordered Proteins.", Nucleic Acids Res, vol. 35, issue Database issue, pp. D786-93, 2007 Jan.
2005
Méndez, R., R. Leplae, M. F. Lensink, and S. J. Wodak, "Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures.", Proteins, vol. 60, issue 2, pp. 150-69, 2005 Aug 1.
Dosztányi, Z., V. Csizmok, P. Tompa, and I. Simon, "IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content.", Bioinformatics, vol. 21, issue 16, pp. 3433-4, 2005 Aug 15.
Croes, D., F. Couche, S. J. Wodak, and J. van Helden, "Metabolic PathFinding: inferring relevant pathways in biochemical networks.", Nucleic Acids Res, vol. 33, issue Web Server issue, pp. W326-30, 2005 Jul 1.
2004
Leplae, R., A. Hebrant, S. J. Wodak, and A. Toussaint, "ACLAME: a CLAssification of Mobile genetic Elements.", Nucleic Acids Res, vol. 32, issue Database issue, pp. D45-9, 2004 Jan 1.
Lemer, C., E. Antezana, F. Couche, F. Fays, X. Santolaria, R's. Janky, Y. Deville, J. Richelle, and S. J. Wodak, "The aMAZE LightBench: a web interface to a relational database of cellular processes.", Nucleic Acids Res, vol. 32, issue Database issue, pp. D443-8, 2004 Jan 1.
2002
Ochagavia, M. Elena, J. Richelle, and S. J. Wodak, "Advanced pairwise structure alignments of proteins and analysis of conformational changes.", Bioinformatics, vol. 18, issue 4, pp. 637-40, 2002 Apr.
Pajon, A., W. F. Vranken, M. Angeles Jimenez, M. Rico, and S. J. Wodak, "Pescador: the PEptides in Solution ConformAtion Database: Online Resource.", J Biomol NMR, vol. 23, issue 2, pp. 85-102, 2002 Jun.