Publications

Found 15 results
Filters: Keyword is Internet and Author is Shoshana J Wodak  [Clear All Filters]
2014
Lensink, M. F., and S. J. Wodak, "Score_set: a CAPRI benchmark for scoring protein complexes.", Proteins, vol. 82, issue 11, pp. 3163-9, 2014 Nov.
2012
Fiume, M., E. J. M. Smith, A. Brook, D. Strbenac, B. Turner, A. M. Mezlini, M. D. Robinson, S. J. Wodak, and M. Brudno, "Savant Genome Browser 2: visualization and analysis for population-scale genomics.", Nucleic Acids Res, vol. 40, issue Web Server issue, pp. W615-21, 2012 Jul.
Wodak, S. J., D. Mietchen, A. M. Collings, R. B. Russell, and P. E. Bourne, "Topic pages: PLoS Computational Biology meets Wikipedia.", PLoS Comput Biol, vol. 8, issue 3, pp. e1002446, 2012.
2011
Turinsky, A. L., S. Razick, B. Turner, I. M. Donaldson, and S. J. Wodak, "Interaction databases on the same page.", Nat Biotechnol, vol. 29, issue 5, pp. 391-3, 2011 May.
2010
Lensink, M. F., and S. J. Wodak, "Docking and scoring protein interactions: CAPRI 2009.", Proteins, vol. 78, issue 15, pp. 3073-84, 2010 Nov 15.
Turner, B., S. Razick, A. L. Turinsky, J. Vlasblom, E. K. Crowdy, E. Cho, K. Morrison, I. M. Donaldson, and S. J. Wodak, "iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence.", Database (Oxford), vol. 2010, pp. baq023, 2010.
Turinsky, A. L., S. Razick, B. Turner, I. M. Donaldson, and S. J. Wodak, "Literature curation of protein interactions: measuring agreement across major public databases.", Database (Oxford), vol. 2010, pp. baq026, 2010.
2009
Pu, S., J. Wong, B. Turner, E. Cho, and S. J. Wodak, "Up-to-date catalogues of yeast protein complexes.", Nucleic Acids Res, vol. 37, issue 3, pp. 825-31, 2009 Feb.
2008
Dessailly, B. H., M. F. Lensink, C. A. Orengo, and S. J. Wodak, "LigASite--a database of biologically relevant binding sites in proteins with known apo-structures.", Nucleic Acids Res, vol. 36, issue Database issue, pp. D667-73, 2008 Jan.
2005
Méndez, R., R. Leplae, M. F. Lensink, and S. J. Wodak, "Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures.", Proteins, vol. 60, issue 2, pp. 150-69, 2005 Aug 1.
Croes, D., F. Couche, S. J. Wodak, and J. van Helden, "Metabolic PathFinding: inferring relevant pathways in biochemical networks.", Nucleic Acids Res, vol. 33, issue Web Server issue, pp. W326-30, 2005 Jul 1.
2004
Leplae, R., A. Hebrant, S. J. Wodak, and A. Toussaint, "ACLAME: a CLAssification of Mobile genetic Elements.", Nucleic Acids Res, vol. 32, issue Database issue, pp. D45-9, 2004 Jan 1.
Lemer, C., E. Antezana, F. Couche, F. Fays, X. Santolaria, R's. Janky, Y. Deville, J. Richelle, and S. J. Wodak, "The aMAZE LightBench: a web interface to a relational database of cellular processes.", Nucleic Acids Res, vol. 32, issue Database issue, pp. D443-8, 2004 Jan 1.
2002
Ochagavia, M. Elena, J. Richelle, and S. J. Wodak, "Advanced pairwise structure alignments of proteins and analysis of conformational changes.", Bioinformatics, vol. 18, issue 4, pp. 637-40, 2002 Apr.
Pajon, A., W. F. Vranken, M. Angeles Jimenez, M. Rico, and S. J. Wodak, "Pescador: the PEptides in Solution ConformAtion Database: Online Resource.", J Biomol NMR, vol. 23, issue 2, pp. 85-102, 2002 Jun.