Publications

Found 19 results
Filters: Keyword is Reproducibility of Results  [Clear All Filters]
2017
Raimondi, D., G. Orlando, J. Messens, and W. F. Vranken, "Investigating the Molecular Mechanisms Behind Uncharacterized Cysteine Losses from Prediction of Their Oxidation State.", Hum Mutat, vol. 38, issue 1, pp. 86-94, 2017 01.
2015
Marcon, E., H. Jain, A. Bhattacharya, H. Guo, S. Phanse, S. Pu, G. Byram, B. C. Collins, E. Dowdell, M. Fenner, et al., "Assessment of a method to characterize antibody selectivity and specificity for use in immunoprecipitation.", Nat Methods, vol. 12, issue 8, pp. 725-31, 2015 Aug.
Tusnády, G. E., L. Dobson, and P. Tompa, "Disordered regions in transmembrane proteins.", Biochim Biophys Acta, vol. 1848, issue 11 Pt A, pp. 2839-48, 2015 Nov.
2014
Somme, J., B. Van Laer, M. Roovers, J. Steyaert, W. Versées, and L. Droogmans, "Characterization of two homologous 2'-O-methyltransferases showing different specificities for their tRNA substrates.", RNA, vol. 20, issue 8, pp. 1257-71, 2014 Aug.
2013
Xavier, C., I. Vaneycken, M. D'huyvetter, J. Heemskerk, M. Keyaerts, C. Vincke, N. Devoogdt, S. Muyldermans, T. Lahoutte, and V. Caveliers, "Synthesis, preclinical validation, dosimetry, and toxicity of 68Ga-NOTA-anti-HER2 Nanobodies for iPET imaging of HER2 receptor expression in cancer.", J Nucl Med, vol. 54, issue 5, pp. 776-84, 2013 May.
2012
Dey, S., A. Pal, M. Guharoy, S. Sonavane, and P. Chakrabarti, "Characterization and prediction of the binding site in DNA-binding proteins: improvement of accuracy by combining residue composition, evolutionary conservation and structural parameters.", Nucleic Acids Res, vol. 40, issue 15, pp. 7150-61, 2012 Aug.
Doreleijers, J. F., A. W. Sousa da Silva, E. Krieger, S. B. Nabuurs, C. A. E. M. Spronk, T. J. Stevens, W. F. Vranken, G. Vriend, and G. W. Vuister, "CING: an integrated residue-based structure validation program suite.", J Biomol NMR, vol. 54, issue 3, pp. 267-83, 2012 Nov.
Doreleijers, J. F., W. F. Vranken, C. Schulte, J. L. Markley, E. L. Ulrich, G. Vriend, and G. W. Vuister, "NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDB.", Nucleic Acids Res, vol. 40, issue Database issue, pp. D519-24, 2012 Jan.
2010
Rieping, W., and W. F. Vranken, "Validation of archived chemical shifts through atomic coordinates.", Proteins, vol. 78, issue 11, pp. 2482-9, 2010 Aug 15.
2007
Wodak, S. J., "From the Mediterranean coast to the shores of Lake Ontario: CAPRI's premiere on the American continent.", Proteins, vol. 69, issue 4, pp. 697-8, 2007 Dec 1.
Pu, S., J. Vlasblom, A. Emili, J. Greenblatt, and S. J. Wodak, "Identifying functional modules in the physical interactome of Saccharomyces cerevisiae.", Proteomics, vol. 7, issue 6, pp. 944-60, 2007 Mar.
Szollosi, E., E. Hazy, C. Szász, and P. Tompa, "Large systematic errors compromise quantitation of intrinsically unstructured proteins.", Anal Biochem, vol. 360, issue 2, pp. 321-3, 2007 Jan 15.
2005
Méndez, R., R. Leplae, M. F. Lensink, and S. J. Wodak, "Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures.", Proteins, vol. 60, issue 2, pp. 150-69, 2005 Aug 1.
Dosztányi, Z., V. Csizmok, P. Tompa, and I. Simon, "The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins.", J Mol Biol, vol. 347, issue 4, pp. 827-39, 2005 Apr 8.
2003
Janin, J., K. Henrick, J. Moult, L. Ten Eyck, M. J. E. Sternberg, S. Vajda, I. Vakser, and S. J. Wodak, "CAPRI: a Critical Assessment of PRedicted Interactions.", Proteins, vol. 52, issue 1, pp. 2-9, 2003 Jul 1.
2001
Das, U., S. Chen, M. Fuxreiter, A. A. Vaguine, J. Richelle, H. M. Berman, and S. J. Wodak, "Checking nucleic acid crystal structures.", Acta Crystallogr D Biol Crystallogr, vol. 57, issue Pt 6, pp. 813-28, 2001 Jun.
1996
de Groot, B. L., A. Amadei, R. M. Scheek, N. A. J. van Nuland, and H. J. Berendsen, "An extended sampling of the configurational space of HPr from E. coli.", Proteins, vol. 26, issue 3, pp. 314-22, 1996 Nov.
Gray, P. M., G. J. Kemp, C. J. Rawlings, N. P. Brown, C. Sander, J. M. Thornton, C. M. Orengo, S. J. Wodak, and J. Richelle, "Macromolecular structure information and databases. The EU BRIDGE Database Project Consortium.", Trends Biochem Sci, vol. 21, issue 7, pp. 251-6, 1996 Jul.
1991
Rooman, M. J., and S. J. Wodak, "Weak correlation between predictive power of individual sequence patterns and overall prediction accuracy in proteins.", Proteins, vol. 9, issue 1, pp. 69-78, 1991.