Publications
Found 50 results
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"Identifying functional modules in the physical interactome of Saccharomyces cerevisiae.",
Proteomics, vol. 7, issue 6, pp. 944-60, 2007 Mar.
"Relating destabilizing regions to known functional sites in proteins.",
BMC Bioinformatics, vol. 8, pp. 141, 2007.
"The alpha-to-beta conformational transition of Alzheimer's Abeta-(1-42) peptide in aqueous media is reversible: a step by step conformational analysis suggests the location of beta conformation seeding.",
Chembiochem, vol. 7, issue 2, pp. 257-67, 2006 Feb.
"GenePro: a Cytoscape plug-in for advanced visualization and analysis of interaction networks.",
Bioinformatics, vol. 22, issue 17, pp. 2178-9, 2006 Sep 1.
"Prevalent structural disorder in E. coli and S. cerevisiae proteomes.",
J Proteome Res, vol. 5, issue 8, pp. 1996-2000, 2006 Aug.
"Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures.",
Proteins, vol. 60, issue 2, pp. 150-69, 2005 Aug 1.
"Computational protein design is a challenge for implicit solvation models.",
Biophys J, vol. 88, issue 1, pp. 156-71, 2005 Jan.
"IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content.",
Bioinformatics, vol. 21, issue 16, pp. 3433-4, 2005 Aug 15.
"Metabolic PathFinding: inferring relevant pathways in biochemical networks.",
Nucleic Acids Res, vol. 33, issue Web Server issue, pp. W326-30, 2005 Jul 1.
"Combining pattern discovery and discriminant analysis to predict gene co-regulation.",
Bioinformatics, vol. 20, issue 15, pp. 2370-9, 2004 Oct 12.
"Prediction of protein-protein interactions: the CAPRI experiment, its evaluation and implications.",
Curr Opin Struct Biol, vol. 14, issue 2, pp. 242-9, 2004 Apr.
"Assessment of blind predictions of protein-protein interactions: current status of docking methods.",
Proteins, vol. 52, issue 1, pp. 51-67, 2003 Jul 1.
"CAPRI: a Critical Assessment of PRedicted Interactions.",
Proteins, vol. 52, issue 1, pp. 2-9, 2003 Jul 1.
"Identifying structural domains in proteins.",
Methods Biochem Anal, vol. 44, pp. 365-85, 2003.
"Intrinsically unstructured proteins evolve by repeat expansion.",
Bioessays, vol. 25, issue 9, pp. 847-55, 2003 Sep.
"Advanced pairwise structure alignments of proteins and analysis of conformational changes.",
Bioinformatics, vol. 18, issue 4, pp. 637-40, 2002 Apr.
"Graph-based analysis of metabolic networks.",
Ernst Schering Res Found Workshop, issue 38, pp. 245-74, 2002.
"Structural basis of macromolecular recognition.",
Adv Protein Chem, vol. 61, pp. 9-73, 2002.
"Automatic protein design with all atom force-fields by exact and heuristic optimization.",
J Mol Biol, vol. 301, issue 3, pp. 713-36, 2000 Aug 18.
"Canonical antigen-binding loop structures in immunoglobulins: more structures, more canonical classes?",
J Mol Biol, vol. 300, issue 1, pp. 83-91, 2000 Jun 30.
"Automatic classification and analysis of alpha alpha-turn motifs in proteins.",
J Mol Biol, vol. 255, issue 1, pp. 235-53, 1996 Jan 12.
"Automatic analysis of protein conformational changes by multiple linkage clustering.",
J Mol Biol, vol. 253, issue 4, pp. 633-47, 1995 Nov 3.
"Optimal protein structure alignments by multiple linkage clustering: application to distantly related proteins.",
Protein Eng, vol. 8, issue 7, pp. 647-62, 1995 Jul.
"Conformational properties of four peptides corresponding to alpha-helical regions of Rhodospirillum cytochrome c2 and bovine calcium binding protein.",
Biochemistry, vol. 33, issue 37, pp. 11158-73, 1994 Sep 20.
"Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches.",
J Mol Biol, vol. 235, issue 5, pp. 1598-613, 1994 Feb 4.