Publications

Found 56 results
Filters: Keyword is Models, Molecular and Author is Shoshana J Wodak  [Clear All Filters]
2001
Nadassy, K., I. Tomás-Oliveira, I. Alberts, J. Janin, and S. J. Wodak, "Standard atomic volumes in double-stranded DNA and packing in protein--DNA interfaces.", Nucleic Acids Res, vol. 29, issue 16, pp. 3362-76, 2001 Aug 15.
Govaerts, C., C. Blanpain, X. Deupi, S. Ballet, J. A. Ballesteros, S. J. Wodak, G. Vassart, L. Pardo, and M. Parmentier, "The TXP motif in the second transmembrane helix of CCR5. A structural determinant of chemokine-induced activation.", J Biol Chem, vol. 276, issue 16, pp. 13217-25, 2001 Apr 20.
2000
Wernisch, L., S. Hery, and S. J. Wodak, "Automatic protein design with all atom force-fields by exact and heuristic optimization.", J Mol Biol, vol. 301, issue 3, pp. 713-36, 2000 Aug 18.
Van Belle, D., L. De Maria, G. Iurcu, and S. J. Wodak, "Pathways of ligand clearance in acetylcholinesterase by multiple copy sampling.", J Mol Biol, vol. 298, issue 4, pp. 705-26, 2000 May 12.
1999
Morel, N., S. Bon, H. M. Greenblatt, D. Van Belle, S. J. Wodak, J. L. Sussman, J. Massoulié, and I. Silman, "Effect of mutations within the peripheral anionic site on the stability of acetylcholinesterase.", Mol Pharmacol, vol. 55, issue 6, pp. 982-92, 1999 Jun.
Vaguine, A. A., J. Richelle, and S. J. Wodak, "SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model.", Acta Crystallogr D Biol Crystallogr, vol. 55, issue Pt 1, pp. 191-205, 1999 Jan.
Nadassy, K., S. J. Wodak, and J. Janin, "Structural features of protein-nucleic acid recognition sites.", Biochemistry, vol. 38, issue 7, pp. 1999-2017, 1999 Feb 16.
1998
Alberts, I. L., K. Nadassy, and S. J. Wodak, "Analysis of zinc binding sites in protein crystal structures.", Protein Sci, vol. 7, issue 8, pp. 1700-16, 1998 Aug.
Giraldo, J., S. J. Wodak, and D. Van Belle, "Conformational analysis of GpA and GpAp in aqueous solution by molecular dynamics and statistical methods.", J Mol Biol, vol. 283, issue 4, pp. 863-82, 1998 Nov 6.
1996
Gordon-Beresford, R. M., D. Van Belle, J. Giraldo, and S. J. Wodak, "Effect of nucleotide substrate binding on the pKa of catalytic residues in barnase.", Proteins, vol. 25, issue 2, pp. 180-94, 1996 Jun.
Kocher, J. P., M. Prévost, S. J. Wodak, and B. Lee, "Properties of the protein matrix revealed by the free energy of cavity formation.", Structure, vol. 4, issue 12, pp. 1517-29, 1996 Dec 15.
1995
Boutonnet, N. S., M. J. Rooman, and S. J. Wodak, "Automatic analysis of protein conformational changes by multiple linkage clustering.", J Mol Biol, vol. 253, issue 4, pp. 633-47, 1995 Nov 3.
Kajava, A. V., G. Vassart, and S. J. Wodak, "Modeling of the three-dimensional structure of proteins with the typical leucine-rich repeats.", Structure, vol. 3, issue 9, pp. 867-77, 1995 Sep 15.
Lippens, G., J. Najib, S. J. Wodak, and A. Tartar, "NMR sequential assignments and solution structure of chlorotoxin, a small scorpion toxin that blocks chloride channels.", Biochemistry, vol. 34, issue 1, pp. 13-21, 1995 Jan 10.
Lemer, C. M., M. J. Rooman, and S. J. Wodak, "Protein structure prediction by threading methods: evaluation of current techniques.", Proteins, vol. 23, issue 3, pp. 337-55, 1995 Nov.
Pugliese, L., M. Prévost, and S. J. Wodak, "Unfolding simulations of the 85-102 beta-hairpin of barnase.", J Mol Biol, vol. 251, issue 3, pp. 432-47, 1995 Aug 18.
1994
Pintar, A., A. Chollet, C. Bradshaw, A. Chaffotte, C. Cadieux, M. J. Rooman, K. Hallenga, J. Knowles, M. Goldberg, and S. J. Wodak, "Conformational properties of four peptides corresponding to alpha-helical regions of Rhodospirillum cytochrome c2 and bovine calcium binding protein.", Biochemistry, vol. 33, issue 37, pp. 11158-73, 1994 Sep 20.
Cerf, C., G. Lippens, V. Ramakrishnan, S. Muyldermans, A. Segers, L. Wyns, S. J. Wodak, and K. Hallenga, "Homo- and heteronuclear two-dimensional NMR studies of the globular domain of histone H1: full assignment, tertiary structure, and comparison with the globular domain of histone H5.", Biochemistry, vol. 33, issue 37, pp. 11079-86, 1994 Sep 20.
1992
Rooman, M. J., and S. J. Wodak, "Extracting information on folding from the amino acid sequence: consensus regions with preferred conformation in homologous proteins.", Biochemistry, vol. 31, issue 42, pp. 10239-49, 1992 Oct 27.
van Tilbeurgh, H., J. Jenkins, M. Chiadmi, J. Janin, S. J. Wodak, N. T. Mrabet, and A. M. Lambeir, "Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 3. Changing metal specificity and the pH profile by site-directed mutagenesis.", Biochemistry, vol. 31, issue 24, pp. 5467-71, 1992 Jun 23.
Scheerlinck, J. P., I. Lasters, M. Claessens, M. De Maeyer, F. Pio, P. Delhaise, and S. J. Wodak, "Recurrent alpha beta loop structures in TIM barrel motifs show a distinct pattern of conserved structural features.", Proteins, vol. 12, issue 4, pp. 299-313, 1992 Apr.
1991
Prévost, M., S. J. Wodak, B. Tidor, and M. Karplus, "Contribution of the hydrophobic effect to protein stability: analysis based on simulations of the Ile-96----Ala mutation in barnase.", Proc Natl Acad Sci U S A, vol. 88, issue 23, pp. 10880-4, 1991 Dec 1.
Rooman, M. J., J. P. Kocher, and S. J. Wodak, "Prediction of protein backbone conformation based on seven structure assignments. Influence of local interactions.", J Mol Biol, vol. 221, issue 3, pp. 961-79, 1991 Oct 5.
Huysmans, M., J. Richelle, and S. J. Wodak, "SESAM: a relational database for structure and sequence of macromolecules.", Proteins, vol. 11, issue 1, pp. 59-76, 1991.
1990
Wodak, S. J., I. Lasters, F. Pio, and M. Claessens, "Basic design features of the parallel alpha beta barrel, a ubiquitous protein-folding motif.", Biochem Soc Symp, vol. 57, pp. 99-121, 1990.

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