Publications

Found 17 results
Filters: Keyword is Nuclear Magnetic Resonance, Biomolecular and Author is Vranken, Wim F  [Clear All Filters]
2014
Vanwetswinkel, S., A. Volkov, Y. G. J. Sterckx, A. Garcia-Pino, L. Buts, W. F. Vranken, J. Bouckaert, R. Roy, L. Wyns, and N. A. J. van Nuland, "Study of the structural and dynamic effects in the FimH adhesin upon α-d-heptyl mannose binding.", J Med Chem, vol. 57, issue 4, pp. 1416-27, 2014 Feb 27.
2013
van der Schot, G., Z. Zhang, R. Vernon, Y. Shen, W. F. Vranken, D. Baker, A. M. J. J. Bonvin, and O. F. Lange, "Improving 3D structure prediction from chemical shift data.", J Biomol NMR, vol. 57, issue 1, pp. 27-35, 2013 Sep.
Montelione, G. T., M. Nilges, A. Bax, P. Güntert, T. Herrmann, J. S. Richardson, C. D. Schwieters, W. F. Vranken, G. W. Vuister, D. S. Wishart, et al., "Recommendations of the wwPDB NMR Validation Task Force.", Structure, vol. 21, issue 9, pp. 1563-70, 2013 Sep 3.
2012
Rosato, A., J. M. Aramini, C. Arrowsmith, A. Bagaria, D. Baker, A. Cavalli, J. F. Doreleijers, A. Eletsky, A. Giachetti, P. Guerry, et al., "Blind testing of routine, fully automated determination of protein structures from NMR data.", Structure, vol. 20, issue 2, pp. 227-36, 2012 Feb 8.
Doreleijers, J. F., A. W. Sousa da Silva, E. Krieger, S. B. Nabuurs, C. A. E. M. Spronk, T. J. Stevens, W. F. Vranken, G. Vriend, and G. W. Vuister, "CING: an integrated residue-based structure validation program suite.", J Biomol NMR, vol. 54, issue 3, pp. 267-83, 2012 Nov.
Camilloni, C., A. De Simone, W. F. Vranken, and M. Vendruscolo, "Determination of secondary structure populations in disordered states of proteins using nuclear magnetic resonance chemical shifts.", Biochemistry, vol. 51, issue 11, pp. 2224-31, 2012 Mar 20.
Doreleijers, J. F., W. F. Vranken, C. Schulte, J. L. Markley, E. L. Ulrich, G. Vriend, and G. W. Vuister, "NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDB.", Nucleic Acids Res, vol. 40, issue Database issue, pp. D519-24, 2012 Jan.
Sahakyan, A. B., A. Cavalli, W. F. Vranken, and M. Vendruscolo, "Protein structure validation using side-chain chemical shifts.", J Phys Chem B, vol. 116, issue 16, pp. 4754-9, 2012 Apr 26.
2011
Bernard, A., W. F. Vranken, B. Bardiaux, M. Nilges, and T. E. Malliavin, "Bayesian estimation of NMR restraint potential and weight: a validation on a representative set of protein structures.", Proteins, vol. 79, issue 5, pp. 1525-37, 2011 May.
Velankar, S., Y. Alhroub, A. Alili, C. Best, H. C. Boutselakis, S. Caboche, M. J. Conroy, J. M. Dana, G. van Ginkel, A. Golovin, et al., "PDBe: Protein Data Bank in Europe.", Nucleic Acids Res, vol. 39, issue Database issue, pp. D402-10, 2011 Jan.
Sahakyan, A. B., W. F. Vranken, A. Cavalli, and M. Vendruscolo, "Structure-based prediction of methyl chemical shifts in proteins.", J Biomol NMR, vol. 50, issue 4, pp. 331-46, 2011 Aug.
2010
Penkett, C. J., G. van Ginkel, S. Velankar, J. G Swaminathan, E. L. Ulrich, S. Mading, T. J. Stevens, R. H. Fogh, A. Gutmanas, G. J. Kleywegt, et al., "Straightforward and complete deposition of NMR data to the PDBe.", J Biomol NMR, vol. 48, issue 2, pp. 85-92, 2010 Oct.
Rieping, W., and W. F. Vranken, "Validation of archived chemical shifts through atomic coordinates.", Proteins, vol. 78, issue 11, pp. 2482-9, 2010 Aug 15.
2009
Doreleijers, J. F., W. F. Vranken, C. Schulte, J. Lin, J. R. Wedell, C. J. Penkett, G. W. Vuister, G. Vriend, J. L. Markley, and E. L. Ulrich, "The NMR restraints grid at BMRB for 5,266 protein and nucleic acid PDB entries.", J Biomol NMR, vol. 45, issue 4, pp. 389-96, 2009 Dec.
Vranken, W. F., and W. Rieping, "Relationship between chemical shift value and accessible surface area for all amino acid atoms.", BMC Struct Biol, vol. 9, pp. 20, 2009.
2002
Pajon, A., W. F. Vranken, M. Angeles Jimenez, M. Rico, and S. J. Wodak, "Pescador: the PEptides in Solution ConformAtion Database: Online Resource.", J Biomol NMR, vol. 23, issue 2, pp. 85-102, 2002 Jun.
Vranken, W. F., S. James, H. P. J. Bennett, and F. Ni, "Solution structures of a 30-residue amino-terminal domain of the carp granulin-1 protein and its amino-terminally truncated 3-30 subfragment: implications for the conformational stability of the stack of two beta-hairpins.", Proteins, vol. 47, issue 1, pp. 14-24, 2002 Apr 1.