Publications

Found 70 results
Filters: Keyword is Protein Conformation and Author is Shoshana J Wodak  [Clear All Filters]
2001
Martins, J. C., M. Enassar, R. Willem, J. M. Wieruzeski, G. Lippens, and S. J. Wodak, "Solution structure of the main alpha-amylase inhibitor from amaranth seeds.", Eur J Biochem, vol. 268, issue 8, pp. 2379-89, 2001 Apr.
Nadassy, K., I. Tomás-Oliveira, I. Alberts, J. Janin, and S. J. Wodak, "Standard atomic volumes in double-stranded DNA and packing in protein--DNA interfaces.", Nucleic Acids Res, vol. 29, issue 16, pp. 3362-76, 2001 Aug 15.
2000
Wernisch, L., S. Hery, and S. J. Wodak, "Automatic protein design with all atom force-fields by exact and heuristic optimization.", J Mol Biol, vol. 301, issue 3, pp. 713-36, 2000 Aug 18.
Van Belle, D., L. De Maria, G. Iurcu, and S. J. Wodak, "Pathways of ligand clearance in acetylcholinesterase by multiple copy sampling.", J Mol Biol, vol. 298, issue 4, pp. 705-26, 2000 May 12.
1999
Morel, N., S. Bon, H. M. Greenblatt, D. Van Belle, S. J. Wodak, J. L. Sussman, J. Massoulié, and I. Silman, "Effect of mutations within the peripheral anionic site on the stability of acetylcholinesterase.", Mol Pharmacol, vol. 55, issue 6, pp. 982-92, 1999 Jun.
Wernisch, L., M. Hunting, and S. J. Wodak, "Identification of structural domains in proteins by a graph heuristic.", Proteins, vol. 35, issue 3, pp. 338-52, 1999 May 15.
Vaguine, A. A., J. Richelle, and S. J. Wodak, "SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model.", Acta Crystallogr D Biol Crystallogr, vol. 55, issue Pt 1, pp. 191-205, 1999 Jan.
Nadassy, K., S. J. Wodak, and J. Janin, "Structural features of protein-nucleic acid recognition sites.", Biochemistry, vol. 38, issue 7, pp. 1999-2017, 1999 Feb 16.
1996
Gordon-Beresford, R. M., D. Van Belle, J. Giraldo, and S. J. Wodak, "Effect of nucleotide substrate binding on the pKa of catalytic residues in barnase.", Proteins, vol. 25, issue 2, pp. 180-94, 1996 Jun.
Wodak, S. J., "Extending molecular systematics to the third dimension.", Nat Struct Biol, vol. 3, issue 7, pp. 575-8, 1996 Jul.
Kocher, J. P., M. Prévost, S. J. Wodak, and B. Lee, "Properties of the protein matrix revealed by the free energy of cavity formation.", Structure, vol. 4, issue 12, pp. 1517-29, 1996 Dec 15.
1995
Rooman, M. J., and S. J. Wodak, "Are database-derived potentials valid for scoring both forward and inverted protein folding?", Protein Eng, vol. 8, issue 9, pp. 849-58, 1995 Sep.
Boutonnet, N. S., M. J. Rooman, and S. J. Wodak, "Automatic analysis of protein conformational changes by multiple linkage clustering.", J Mol Biol, vol. 253, issue 4, pp. 633-47, 1995 Nov 3.
Kajava, A. V., G. Vassart, and S. J. Wodak, "Modeling of the three-dimensional structure of proteins with the typical leucine-rich repeats.", Structure, vol. 3, issue 9, pp. 867-77, 1995 Sep 15.
Boutonnet, N. S., M. J. Rooman, M. E. Ochagavia, J. Richelle, and S. J. Wodak, "Optimal protein structure alignments by multiple linkage clustering: application to distantly related proteins.", Protein Eng, vol. 8, issue 7, pp. 647-62, 1995 Jul.
Lemer, C. M., M. J. Rooman, and S. J. Wodak, "Protein structure prediction by threading methods: evaluation of current techniques.", Proteins, vol. 23, issue 3, pp. 337-55, 1995 Nov.
1994
Pintar, A., A. Chollet, C. Bradshaw, A. Chaffotte, C. Cadieux, M. J. Rooman, K. Hallenga, J. Knowles, M. Goldberg, and S. J. Wodak, "Conformational properties of four peptides corresponding to alpha-helical regions of Rhodospirillum cytochrome c2 and bovine calcium binding protein.", Biochemistry, vol. 33, issue 37, pp. 11158-73, 1994 Sep 20.
Kocher, J. P., M. J. Rooman, and S. J. Wodak, "Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches.", J Mol Biol, vol. 235, issue 5, pp. 1598-613, 1994 Feb 4.
1993
Janin, J., and S. J. Wodak, "The quaternary structure of carbonmonoxy hemoglobin ypsilanti.", Proteins, vol. 15, issue 1, pp. 1-4, 1993 Jan.
Lippens, G., K. Hallenga, D. Van Belle, S. J. Wodak, N. R. Nirmala, P. Hill, K. C. Russell, D. D. Smith, and V. J. Hruby, "Transfer nuclear Overhauser effect study of the conformation of oxytocin bound to bovine neurophysin I.", Biochemistry, vol. 32, issue 36, pp. 9423-34, 1993 Sep 14.
1992
Rooman, M. J., J. P. Kocher, and S. J. Wodak, "Extracting information on folding from the amino acid sequence: accurate predictions for protein regions with preferred conformation in the absence of tertiary interactions.", Biochemistry, vol. 31, issue 42, pp. 10226-38, 1992 Oct 27.
Rooman, M. J., and S. J. Wodak, "Extracting information on folding from the amino acid sequence: consensus regions with preferred conformation in homologous proteins.", Biochemistry, vol. 31, issue 42, pp. 10239-49, 1992 Oct 27.
van Tilbeurgh, H., J. Jenkins, M. Chiadmi, J. Janin, S. J. Wodak, N. T. Mrabet, and A. M. Lambeir, "Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 3. Changing metal specificity and the pH profile by site-directed mutagenesis.", Biochemistry, vol. 31, issue 24, pp. 5467-71, 1992 Jun 23.
Jenkins, J., J. Janin, F. Rey, M. Chiadmi, H. van Tilbeurgh, I. Lasters, M. De Maeyer, D. Van Belle, S. J. Wodak, and M. Lauwereys, "Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 1. Crystallography and site-directed mutagenesis of metal binding sites.", Biochemistry, vol. 31, issue 24, pp. 5449-58, 1992 Jun 23.
Scheerlinck, J. P., I. Lasters, M. Claessens, M. De Maeyer, F. Pio, P. Delhaise, and S. J. Wodak, "Recurrent alpha beta loop structures in TIM barrel motifs show a distinct pattern of conserved structural features.", Proteins, vol. 12, issue 4, pp. 299-313, 1992 Apr.

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