Publications

Found 20 results
Filters: Keyword is Binding Sites and Author is Shoshana J Wodak  [Clear All Filters]
2011
Leung, E., A. Datti, M. Cossette, J. Goodreid, S. E. McCaw, M. Mah, A. Nakhamchik, K. Ogata, M. El Bakkouri, Y-Q. Cheng, et al., "Activators of cylindrical proteases as antimicrobials: identification and development of small molecule activators of ClpP protease.", Chem Biol, vol. 18, issue 9, pp. 1167-78, 2011 Sep 23.
Fleishman, S. J., T. A. Whitehead, E-M. Strauch, J. E. Corn, S. Qin, H-X. Zhou, J. C. Mitchell, O. N. A. Demerdash, M. Takeda-Shitaka, G. Terashi, et al., "Community-wide assessment of protein-interface modeling suggests improvements to design methodology.", J Mol Biol, vol. 414, issue 2, pp. 289-302, 2011 Nov 25.
2010
Pu, S., A. L. Turinsky, J. Vlasblom, T. On, X. Xiong, A. Emili, Z. Zhang, J. Greenblatt, J. Parkinson, and S. J. Wodak, "Expanding the landscape of chromatin modification (CM)-related functional domains and genes in human.", PLoS One, vol. 5, issue 11, pp. e14122, 2010.
2008
Dessailly, B. H., M. F. Lensink, C. A. Orengo, and S. J. Wodak, "LigASite--a database of biologically relevant binding sites in proteins with known apo-structures.", Nucleic Acids Res, vol. 36, issue Database issue, pp. D667-73, 2008 Jan.
2005
Güldener, U., M. Münsterkötter, G. Kastenmüller, N. Strack, J. van Helden, C. Lemer, J. Richelles, S. J. Wodak, J. García-Martínez, J. E. Pérez-Ortín, et al., "CYGD: the Comprehensive Yeast Genome Database.", Nucleic Acids Res, vol. 33, issue Database issue, pp. D364-8, 2005 Jan 1.
2004
Giraldo, J., L. De Maria, and S. J. Wodak, "Shift in nucleotide conformational equilibrium contributes to increased rate of catalysis of GpAp versus GpA in barnase.", Proteins, vol. 56, issue 2, pp. 261-76, 2004 Aug 1.
2003
Méndez, R., R. Leplae, L. De Maria, and S. J. Wodak, "Assessment of blind predictions of protein-protein interactions: current status of docking methods.", Proteins, vol. 52, issue 1, pp. 51-67, 2003 Jul 1.
2002
Wodak, S. J., and J. Janin, "Structural basis of macromolecular recognition.", Adv Protein Chem, vol. 61, pp. 9-73, 2002.
2001
Martins, J. C., M. Enassar, R. Willem, J. M. Wieruzeski, G. Lippens, and S. J. Wodak, "Solution structure of the main alpha-amylase inhibitor from amaranth seeds.", Eur J Biochem, vol. 268, issue 8, pp. 2379-89, 2001 Apr.
Nadassy, K., I. Tomás-Oliveira, I. Alberts, J. Janin, and S. J. Wodak, "Standard atomic volumes in double-stranded DNA and packing in protein--DNA interfaces.", Nucleic Acids Res, vol. 29, issue 16, pp. 3362-76, 2001 Aug 15.
Govaerts, C., C. Blanpain, X. Deupi, S. Ballet, J. A. Ballesteros, S. J. Wodak, G. Vassart, L. Pardo, and M. Parmentier, "The TXP motif in the second transmembrane helix of CCR5. A structural determinant of chemokine-induced activation.", J Biol Chem, vol. 276, issue 16, pp. 13217-25, 2001 Apr 20.
2000
Van Belle, D., L. De Maria, G. Iurcu, and S. J. Wodak, "Pathways of ligand clearance in acetylcholinesterase by multiple copy sampling.", J Mol Biol, vol. 298, issue 4, pp. 705-26, 2000 May 12.
1999
Nadassy, K., S. J. Wodak, and J. Janin, "Structural features of protein-nucleic acid recognition sites.", Biochemistry, vol. 38, issue 7, pp. 1999-2017, 1999 Feb 16.
1998
Alberts, I. L., K. Nadassy, and S. J. Wodak, "Analysis of zinc binding sites in protein crystal structures.", Protein Sci, vol. 7, issue 8, pp. 1700-16, 1998 Aug.
1995
Kajava, A. V., G. Vassart, and S. J. Wodak, "Modeling of the three-dimensional structure of proteins with the typical leucine-rich repeats.", Structure, vol. 3, issue 9, pp. 867-77, 1995 Sep 15.
1992
Lambeir, A. M., M. Lauwereys, P. Stanssens, N. T. Mrabet, J. Snauwaert, H. van Tilbeurgh, G. Matthyssens, I. Lasters, M. De Maeyer, and S. J. Wodak, "Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 2. Site-directed mutagenesis of the xylose binding site.", Biochemistry, vol. 31, issue 24, pp. 5459-66, 1992 Jun 23.
Jenkins, J., J. Janin, F. Rey, M. Chiadmi, H. van Tilbeurgh, I. Lasters, M. De Maeyer, D. Van Belle, S. J. Wodak, and M. Lauwereys, "Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 1. Crystallography and site-directed mutagenesis of metal binding sites.", Biochemistry, vol. 31, issue 24, pp. 5449-58, 1992 Jun 23.
van Tilbeurgh, H., J. Jenkins, M. Chiadmi, J. Janin, S. J. Wodak, N. T. Mrabet, and A. M. Lambeir, "Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 3. Changing metal specificity and the pH profile by site-directed mutagenesis.", Biochemistry, vol. 31, issue 24, pp. 5467-71, 1992 Jun 23.
1986
Wodak, S. J., J. L. De Coen, S. J. Edelstein, H. Demarne, and Y. Beuzard, "Modification of human hemoglobin by glutathione. III. Perturbations of hemoglobin conformation analyzed by computer modeling.", J Biol Chem, vol. 261, issue 31, pp. 14717-24, 1986 Nov 5.
1975
Levinthal, C., S. J. Wodak, P. Kahn, and A. K. Dadivanian, "Hemoglobin interaction in sickle cell fibers. I: Theoretical approaches to the molecular contacts.", Proc Natl Acad Sci U S A, vol. 72, issue 4, pp. 1330-4, 1975 Apr.