Publications

Found 145 results
Filters: Author is Shoshana J Wodak  [Clear All Filters]
1996
Wodak, S. J., "Extending molecular systematics to the third dimension.", Nat Struct Biol, vol. 3, issue 7, pp. 575-8, 1996 Jul.
Gray, P. M., G. J. Kemp, C. J. Rawlings, N. P. Brown, C. Sander, J. M. Thornton, C. M. Orengo, S. J. Wodak, and J. Richelle, "Macromolecular structure information and databases. The EU BRIDGE Database Project Consortium.", Trends Biochem Sci, vol. 21, issue 7, pp. 251-6, 1996 Jul.
Kocher, J. P., M. Prévost, S. J. Wodak, and B. Lee, "Properties of the protein matrix revealed by the free energy of cavity formation.", Structure, vol. 4, issue 12, pp. 1517-29, 1996 Dec 15.
1995
Rooman, M. J., and S. J. Wodak, "Are database-derived potentials valid for scoring both forward and inverted protein folding?", Protein Eng, vol. 8, issue 9, pp. 849-58, 1995 Sep.
Boutonnet, N. S., M. J. Rooman, and S. J. Wodak, "Automatic analysis of protein conformational changes by multiple linkage clustering.", J Mol Biol, vol. 253, issue 4, pp. 633-47, 1995 Nov 3.
Kajava, A. V., G. Vassart, and S. J. Wodak, "Modeling of the three-dimensional structure of proteins with the typical leucine-rich repeats.", Structure, vol. 3, issue 9, pp. 867-77, 1995 Sep 15.
Lippens, G., J. Najib, S. J. Wodak, and A. Tartar, "NMR sequential assignments and solution structure of chlorotoxin, a small scorpion toxin that blocks chloride channels.", Biochemistry, vol. 34, issue 1, pp. 13-21, 1995 Jan 10.
Boutonnet, N. S., M. J. Rooman, M. E. Ochagavia, J. Richelle, and S. J. Wodak, "Optimal protein structure alignments by multiple linkage clustering: application to distantly related proteins.", Protein Eng, vol. 8, issue 7, pp. 647-62, 1995 Jul.
Lemer, C. M., M. J. Rooman, and S. J. Wodak, "Protein structure prediction by threading methods: evaluation of current techniques.", Proteins, vol. 23, issue 3, pp. 337-55, 1995 Nov.
Pugliese, L., M. Prévost, and S. J. Wodak, "Unfolding simulations of the 85-102 beta-hairpin of barnase.", J Mol Biol, vol. 251, issue 3, pp. 432-47, 1995 Aug 18.
1994
Pintar, A., A. Chollet, C. Bradshaw, A. Chaffotte, C. Cadieux, M. J. Rooman, K. Hallenga, J. Knowles, M. Goldberg, and S. J. Wodak, "Conformational properties of four peptides corresponding to alpha-helical regions of Rhodospirillum cytochrome c2 and bovine calcium binding protein.", Biochemistry, vol. 33, issue 37, pp. 11158-73, 1994 Sep 20.
Kocher, J. P., M. J. Rooman, and S. J. Wodak, "Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches.", J Mol Biol, vol. 235, issue 5, pp. 1598-613, 1994 Feb 4.
Cerf, C., G. Lippens, V. Ramakrishnan, S. Muyldermans, A. Segers, L. Wyns, S. J. Wodak, and K. Hallenga, "Homo- and heteronuclear two-dimensional NMR studies of the globular domain of histone H1: full assignment, tertiary structure, and comparison with the globular domain of histone H5.", Biochemistry, vol. 33, issue 37, pp. 11079-86, 1994 Sep 20.
1993
Cerf, C., G. Lippens, S. Muyldermans, A. Segers, V. Ramakrishnan, S. J. Wodak, K. Hallenga, and L. Wyns, "Homo- and heteronuclear two-dimensional NMR studies of the globular domain of histone H1: sequential assignment and secondary structure.", Biochemistry, vol. 32, issue 42, pp. 11345-51, 1993 Oct 26.
Janin, J., and S. J. Wodak, "The quaternary structure of carbonmonoxy hemoglobin ypsilanti.", Proteins, vol. 15, issue 1, pp. 1-4, 1993 Jan.
Lippens, G., K. Hallenga, D. Van Belle, S. J. Wodak, N. R. Nirmala, P. Hill, K. C. Russell, D. D. Smith, and V. J. Hruby, "Transfer nuclear Overhauser effect study of the conformation of oxytocin bound to bovine neurophysin I.", Biochemistry, vol. 32, issue 36, pp. 9423-34, 1993 Sep 14.
1992
Rooman, M. J., J. P. Kocher, and S. J. Wodak, "Extracting information on folding from the amino acid sequence: accurate predictions for protein regions with preferred conformation in the absence of tertiary interactions.", Biochemistry, vol. 31, issue 42, pp. 10226-38, 1992 Oct 27.
Rooman, M. J., and S. J. Wodak, "Extracting information on folding from the amino acid sequence: consensus regions with preferred conformation in homologous proteins.", Biochemistry, vol. 31, issue 42, pp. 10239-49, 1992 Oct 27.
van Tilbeurgh, H., J. Jenkins, M. Chiadmi, J. Janin, S. J. Wodak, N. T. Mrabet, and A. M. Lambeir, "Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 3. Changing metal specificity and the pH profile by site-directed mutagenesis.", Biochemistry, vol. 31, issue 24, pp. 5467-71, 1992 Jun 23.
Lambeir, A. M., M. Lauwereys, P. Stanssens, N. T. Mrabet, J. Snauwaert, H. van Tilbeurgh, G. Matthyssens, I. Lasters, M. De Maeyer, and S. J. Wodak, "Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 2. Site-directed mutagenesis of the xylose binding site.", Biochemistry, vol. 31, issue 24, pp. 5459-66, 1992 Jun 23.
Jenkins, J., J. Janin, F. Rey, M. Chiadmi, H. van Tilbeurgh, I. Lasters, M. De Maeyer, D. Van Belle, S. J. Wodak, and M. Lauwereys, "Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 1. Crystallography and site-directed mutagenesis of metal binding sites.", Biochemistry, vol. 31, issue 24, pp. 5449-58, 1992 Jun 23.
Scheerlinck, J. P., I. Lasters, M. Claessens, M. De Maeyer, F. Pio, P. Delhaise, and S. J. Wodak, "Recurrent alpha beta loop structures in TIM barrel motifs show a distinct pattern of conserved structural features.", Proteins, vol. 12, issue 4, pp. 299-313, 1992 Apr.
1991
Prévost, M., S. J. Wodak, B. Tidor, and M. Karplus, "Contribution of the hydrophobic effect to protein stability: analysis based on simulations of the Ile-96----Ala mutation in barnase.", Proc Natl Acad Sci U S A, vol. 88, issue 23, pp. 10880-4, 1991 Dec 1.
Rooman, M. J., J. P. Kocher, and S. J. Wodak, "Prediction of protein backbone conformation based on seven structure assignments. Influence of local interactions.", J Mol Biol, vol. 221, issue 3, pp. 961-79, 1991 Oct 5.
Huysmans, M., J. Richelle, and S. J. Wodak, "SESAM: a relational database for structure and sequence of macromolecules.", Proteins, vol. 11, issue 1, pp. 59-76, 1991.

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