Publications

Found 347 results
Filters: Keyword is Models, Molecular  [Clear All Filters]
2005
Conrath, K., C. Vincke, B. Stijlemans, J. Schymkowitz, K. Decanniere, L. Wyns, S. Muyldermans, and R. Loris, "Antigen binding and solubility effects upon the veneering of a camel VHH in framework-2 to mimic a VH.", J Mol Biol, vol. 350, issue 1, pp. 112-25, 2005 Jul 1.
Méndez, R., R. Leplae, M. F. Lensink, and S. J. Wodak, "Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures.", Proteins, vol. 60, issue 2, pp. 150-69, 2005 Aug 1.
Jaramillo, A., and S. J. Wodak, "Computational protein design is a challenge for implicit solvation models.", Biophys J, vol. 88, issue 1, pp. 156-71, 2005 Jan.
Lah, J., M. Simic, G. Vesnaver, I. Marianovsky, G. Glaser, H. Engelberg-Kulka, and R. Loris, "Energetics of structural transitions of the addiction antitoxin MazE: is a programmed bacterial cell death dependent on the intrinsically flexible nature of the antitoxins?", J Biol Chem, vol. 280, issue 17, pp. 17397-407, 2005 Apr 29.
Azuaga, A. I., J. L. Neira, and N. A. J. van Nuland, "HPr as a model protein in structure, interaction, folding and stability studies.", Protein Pept Lett, vol. 12, issue 2, pp. 123-37, 2005 Feb.
Saerens, D., M. Pellis, R. Loris, E. Pardon, M. Dumoulin, A. Matagne, L. Wyns, S. Muyldermans, and K. Conrath, "Identification of a universal VHH framework to graft non-canonical antigen-binding loops of camel single-domain antibodies.", J Mol Biol, vol. 352, issue 3, pp. 597-607, 2005 Sep 23.
Buts, L., A. Wellens, I. Van Molle, L. Wyns, R. Loris, M. Lahmann, S. Oscarson, H. De Greve, and J. Bouckaert, "Impact of natural variation in bacterial F17G adhesins on crystallization behaviour.", Acta Crystallogr D Biol Crystallogr, vol. 61, issue Pt 8, pp. 1149-59, 2005 Aug.
Dosztányi, Z., V. Csizmok, P. Tompa, and I. Simon, "IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content.", Bioinformatics, vol. 21, issue 16, pp. 3433-4, 2005 Aug 15.
Dumoulin, M., D. Canet, A. M. Last, E. Pardon, D. B. Archer, S. Muyldermans, L. Wyns, A. Matagne, C. V. Robinson, C. Redfield, et al., "Reduced global cooperativity is a common feature underlying the amyloidogenicity of pathogenic lysozyme mutations.", J Mol Biol, vol. 346, issue 3, pp. 773-88, 2005 Feb 25.
Bernard, C., K. Houben, N. M. Derix, D. Marks, M. A. van der Horst, K. J. Hellingwerf, R. Boelens, R. Kaptein, and N. A. J. van Nuland, "The solution structure of a transient photoreceptor intermediate: Delta25 photoactive yellow protein.", Structure, vol. 13, issue 7, pp. 953-62, 2005 Jul.
De Genst, E., K. Silence, M. Arbabi Ghahroudi, K. Decanniere, R. Loris, J. Kinne, L. Wyns, and S. Muyldermans, "Strong in vivo maturation compensates for structurally restricted H3 loops in antibody repertoires.", J Biol Chem, vol. 280, issue 14, pp. 14114-21, 2005 Apr 8.
Loverix, S., P. Geerlings, M. McNaughton, K. Augustyns, A. Vandemeulebroucke, J. Steyaert, and W. Versées, "Substrate-assisted leaving group activation in enzyme-catalyzed N-glycosidic bond cleavage.", J Biol Chem, vol. 280, issue 15, pp. 14799-802, 2005 Apr 15.
Buts, L., J. Lah, M-H. Dao-Thi, L. Wyns, and R. Loris, "Toxin-antitoxin modules as bacterial metabolic stress managers.", Trends Biochem Sci, vol. 30, issue 12, pp. 672-9, 2005 Dec.
2004
Friedrich, P., P. Tompa, and A. Farkas, "The calpain-system of Drosophila melanogaster: coming of age.", Bioessays, vol. 26, issue 10, pp. 1088-96, 2004 Oct.
De Genst, E., F. Handelberg, A. Van Meirhaeghe, S. Vynck, R. Loris, L. Wyns, and S. Muyldermans, "Chemical basis for the affinity maturation of a camel single domain antibody.", J Biol Chem, vol. 279, issue 51, pp. 53593-601, 2004 Dec 17.
Alexa, A., Z. Bozoky, A. Farkas, P. Tompa, and P. Friedrich, "Contribution of distinct structural elements to activation of calpain by Ca2+ ions.", J Biol Chem, vol. 279, issue 19, pp. 20118-26, 2004 May 7.
Casares, S., M. Sadqi, O. Lopez-Mayorga, F. Conejero-Lara, and N. A. J. van Nuland, "Detection and characterization of partially unfolded oligomers of the SH3 domain of alpha-spectrin.", Biophys J, vol. 86, issue 4, pp. 2403-13, 2004 Apr.
Messens, J., I. Van Molle, P. Vanhaesebrouck, M. Limbourg, K. Van Belle, K. Wahni, J. C. Martins, R. Loris, and L. Wyns, "How thioredoxin can reduce a buried disulphide bond.", J Mol Biol, vol. 339, issue 3, pp. 527-37, 2004 Jun 4.
Versées, W., S. Loverix, A. Vandemeulebroucke, P. Geerlings, and J. Steyaert, "Leaving group activation by aromatic stacking: an alternative to general acid catalysis.", J Mol Biol, vol. 338, issue 1, pp. 1-6, 2004 Apr 16.
Tzakos, A. G., P. Fuchs, N. A. J. van Nuland, A. Troganis, T. Tselios, S. Deraos, J. Matsoukas, I. P. Gerothanassis, and A. M. J. J. Bonvin, "NMR and molecular dynamics studies of an autoimmune myelin basic protein peptide and its antagonist: structural implications for the MHC II (I-Au)-peptide complex from docking calculations.", Eur J Biochem, vol. 271, issue 16, pp. 3399-413, 2004 Aug.
Wodak, S. J., and R. Méndez, "Prediction of protein-protein interactions: the CAPRI experiment, its evaluation and implications.", Curr Opin Struct Biol, vol. 14, issue 2, pp. 242-9, 2004 Apr.
Tompa, P., and P. Csermely, "The role of structural disorder in the function of RNA and protein chaperones.", FASEB J, vol. 18, issue 11, pp. 1169-75, 2004 Aug.
Giraldo, J., L. De Maria, and S. J. Wodak, "Shift in nucleotide conformational equilibrium contributes to increased rate of catalysis of GpAp versus GpA in barnase.", Proteins, vol. 56, issue 2, pp. 261-76, 2004 Aug 1.

Pages