Publications

Found 16 results
Filters: Keyword is Protein Conformation and Author is Vranken, Wim F  [Clear All Filters]
2016
Pancsa, R., M. Varadi, P. Tompa, and W. F. Vranken, "Start2Fold: a database of hydrogen/deuterium exchange data on protein folding and stability.", Nucleic Acids Res, vol. 44, issue D1, pp. D429-34, 2016 Jan 04.
2014
Sterckx, Y. G. J., A. Volkov, W. F. Vranken, J. Kragelj, M. Ringkjøbi Jensen, L. Buts, A. Garcia-Pino, T. Jové, L. Van Melderen, M. Blackledge, et al., "Small-angle X-ray scattering- and nuclear magnetic resonance-derived conformational ensemble of the highly flexible antitoxin PaaA2.", Structure, vol. 22, issue 6, pp. 854-65, 2014 Jun 10.
Vanwetswinkel, S., A. Volkov, Y. G. J. Sterckx, A. Garcia-Pino, L. Buts, W. F. Vranken, J. Bouckaert, R. Roy, L. Wyns, and N. A. J. van Nuland, "Study of the structural and dynamic effects in the FimH adhesin upon α-d-heptyl mannose binding.", J Med Chem, vol. 57, issue 4, pp. 1416-27, 2014 Feb 27.
2013
Cilia, E., R. Pancsa, P. Tompa, T. Lenaerts, and W. F. Vranken, "From protein sequence to dynamics and disorder with DynaMine.", Nat Commun, vol. 4, pp. 2741, 2013.
van der Schot, G., Z. Zhang, R. Vernon, Y. Shen, W. F. Vranken, D. Baker, A. M. J. J. Bonvin, and O. F. Lange, "Improving 3D structure prediction from chemical shift data.", J Biomol NMR, vol. 57, issue 1, pp. 27-35, 2013 Sep.
Montelione, G. T., M. Nilges, A. Bax, P. Güntert, T. Herrmann, J. S. Richardson, C. D. Schwieters, W. F. Vranken, G. W. Vuister, D. S. Wishart, et al., "Recommendations of the wwPDB NMR Validation Task Force.", Structure, vol. 21, issue 9, pp. 1563-70, 2013 Sep 3.
2012
Rosato, A., J. M. Aramini, C. Arrowsmith, A. Bagaria, D. Baker, A. Cavalli, J. F. Doreleijers, A. Eletsky, A. Giachetti, P. Guerry, et al., "Blind testing of routine, fully automated determination of protein structures from NMR data.", Structure, vol. 20, issue 2, pp. 227-36, 2012 Feb 8.
Doreleijers, J. F., A. W. Sousa da Silva, E. Krieger, S. B. Nabuurs, C. A. E. M. Spronk, T. J. Stevens, W. F. Vranken, G. Vriend, and G. W. Vuister, "CING: an integrated residue-based structure validation program suite.", J Biomol NMR, vol. 54, issue 3, pp. 267-83, 2012 Nov.
Doreleijers, J. F., W. F. Vranken, C. Schulte, J. L. Markley, E. L. Ulrich, G. Vriend, and G. W. Vuister, "NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDB.", Nucleic Acids Res, vol. 40, issue Database issue, pp. D519-24, 2012 Jan.
Sahakyan, A. B., A. Cavalli, W. F. Vranken, and M. Vendruscolo, "Protein structure validation using side-chain chemical shifts.", J Phys Chem B, vol. 116, issue 16, pp. 4754-9, 2012 Apr 26.
2011
Bernard, A., W. F. Vranken, B. Bardiaux, M. Nilges, and T. E. Malliavin, "Bayesian estimation of NMR restraint potential and weight: a validation on a representative set of protein structures.", Proteins, vol. 79, issue 5, pp. 1525-37, 2011 May.
Velankar, S., Y. Alhroub, A. Alili, C. Best, H. C. Boutselakis, S. Caboche, M. J. Conroy, J. M. Dana, G. van Ginkel, A. Golovin, et al., "PDBe: Protein Data Bank in Europe.", Nucleic Acids Res, vol. 39, issue Database issue, pp. D402-10, 2011 Jan.
Sahakyan, A. B., W. F. Vranken, A. Cavalli, and M. Vendruscolo, "Structure-based prediction of methyl chemical shifts in proteins.", J Biomol NMR, vol. 50, issue 4, pp. 331-46, 2011 Aug.
Sahakyan, A. B., W. F. Vranken, A. Cavalli, and M. Vendruscolo, "Using side-chain aromatic proton chemical shifts for a quantitative analysis of protein structures.", Angew Chem Int Ed Engl, vol. 50, issue 41, pp. 9620-3, 2011 Oct 4.
2009
Rosato, A., A. Bagaria, D. Baker, B. Bardiaux, A. Cavalli, J. F. Doreleijers, A. Giachetti, P. Guerry, P. Güntert, T. Herrmann, et al., "CASD-NMR: critical assessment of automated structure determination by NMR.", Nat Methods, vol. 6, issue 9, pp. 625-6, 2009 Sep.
2002
Pajon, A., W. F. Vranken, M. Angeles Jimenez, M. Rico, and S. J. Wodak, "Pescador: the PEptides in Solution ConformAtion Database: Online Resource.", J Biomol NMR, vol. 23, issue 2, pp. 85-102, 2002 Jun.