Publications

Found 13 results
Filters: Author is Vlasblom, James  [Clear All Filters]
2015
Pu, S., J. Vlasblom, A. Turinsky, E. Marcon, S. Phanse, S. Smiley Trimble, J. Olsen, J. Greenblatt, A. Emili, and S. J. Wodak, "Extracting high confidence protein interactions from affinity purification data: at the crossroads.", J Proteomics, vol. 118, pp. 63-80, 2015 Apr 06.
2013
Wodak, S. J., J. Vlasblom, A. L. Turinsky, and S. Pu, "Protein-protein interaction networks: the puzzling riches.", Curr Opin Struct Biol, vol. 23, issue 6, pp. 941-53, 2013 Dec.
2012
Havugimana, P. C., T. G Hart, T. Nepusz, H. Yang, A. L. Turinsky, Z. Li, P. I. Wang, D. R. Boutz, V. Fong, S. Phanse, et al., "A census of human soluble protein complexes.", Cell, vol. 150, issue 5, pp. 1068-81, 2012 Aug 31.
Babu, M., J. Vlasblom, S. Pu, X. Guo, C. Graham, B. D. M. Bean, H. E. Burston, F. J. Vizeacoumar, J. Snider, S. Phanse, et al., "Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae.", Nature, vol. 489, issue 7417, pp. 585-9, 2012 Sep 27.
2011
Babu, M., J. J Díaz-Mejía, J. Vlasblom, A. Gagarinova, S. Phanse, C. Graham, F. Yousif, H. Ding, X. Xiong, A. Nazarians-Armavil, et al., "Genetic interaction maps in Escherichia coli reveal functional crosstalk among cell envelope biogenesis pathways.", PLoS Genet, vol. 7, issue 11, pp. e1002377, 2011 Nov.
Hao, Y., A. Merkoulovitch, J. Vlasblom, S. Pu, A. L. Turinsky, D. Roudeva, B. Turner, J. Greenblatt, and S. J. Wodak, "OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms.", Bioinformatics, vol. 27, issue 6, pp. 883-4, 2011 Mar 15.
2010
Pu, S., A. L. Turinsky, J. Vlasblom, T. On, X. Xiong, A. Emili, Z. Zhang, J. Greenblatt, J. Parkinson, and S. J. Wodak, "Expanding the landscape of chromatin modification (CM)-related functional domains and genes in human.", PLoS One, vol. 5, issue 11, pp. e14122, 2010.
Turner, B., S. Razick, A. L. Turinsky, J. Vlasblom, E. K. Crowdy, E. Cho, K. Morrison, I. M. Donaldson, and S. J. Wodak, "iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence.", Database (Oxford), vol. 2010, pp. baq023, 2010.
2009
Wodak, S. J., S. Pu, J. Vlasblom, and B. Séraphin, "Challenges and rewards of interaction proteomics.", Mol Cell Proteomics, vol. 8, issue 1, pp. 3-18, 2009 Jan.
Vlasblom, J., and S. J. Wodak, "Markov clustering versus affinity propagation for the partitioning of protein interaction graphs.", BMC Bioinformatics, vol. 10, pp. 99, 2009.
2008
Pu, S., K. Ronen, J. Vlasblom, J. Greenblatt, and S. J. Wodak, "Local coherence in genetic interaction patterns reveals prevalent functional versatility.", Bioinformatics, vol. 24, issue 20, pp. 2376-83, 2008 Oct 15.
2006
Vlasblom, J., S. Wu, S. Pu, M. Superina, G. Liu, C. Orsi, and S. J. Wodak, "GenePro: a Cytoscape plug-in for advanced visualization and analysis of interaction networks.", Bioinformatics, vol. 22, issue 17, pp. 2178-9, 2006 Sep 1.
Krogan, N. J., G. Cagney, H. Yu, G. Zhong, X. Guo, A. Ignatchenko, J. Li, S. Pu, N. Datta, A. P. Tikuisis, et al., "Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.", Nature, vol. 440, issue 7084, pp. 637-43, 2006 Mar 30.