PDBe: Protein Data Bank in Europe.

TitlePDBe: Protein Data Bank in Europe.
Publication TypeJournal Article
Year of Publication2012
AuthorsVelankar, S., Y. Alhroub, C. Best, S. Caboche, M. J. Conroy, J. M. Dana, M. A. Fernande Montecelo, G. van Ginkel, A. Golovin, S. P. Gore, A. Gutmanas, P. Haslam, P. M. S. Hendrickx, E. Heuson, M. Hirshberg, M. John, I. Lagerstedt, S. Mir, L. E. Newman, T. J. Oldfield, A. Patwardhan, L. Rinaldi, G. Sahni, E. Sanz-García, S. Sen, R. Slowley, A. Suarez-Uruena, J. G Swaminathan, M. F. Symmons, W. F. Vranken, M. Wainwright, and G. J. Kleywegt
JournalNucleic Acids Res
Volume40
IssueDatabase issue
PaginationD445-52
Date Published2012 Jan
ISSN1362-4962
KeywordsComputer Graphics, Databases, Protein, Models, Molecular, Nuclear Magnetic Resonance, Biomolecular, Protein Conformation, Proteins, Sequence Analysis, Protein, Software
Abstract

The Protein Data Bank in Europe (PDBe; pdbe.org) is a partner in the Worldwide PDB organization (wwPDB; wwpdb.org) and as such actively involved in managing the single global archive of biomacromolecular structure data, the PDB. In addition, PDBe develops tools, services and resources to make structure-related data more accessible to the biomedical community. Here we describe recently developed, extended or improved services, including an animated structure-presentation widget (PDBportfolio), a widget to graphically display the coverage of any UniProt sequence in the PDB (UniPDB), chemistry- and taxonomy-based PDB-archive browsers (PDBeXplore), and a tool for interactive visualization of NMR structures, corresponding experimental data as well as validation and analysis results (Vivaldi).

DOI10.1093/nar/gkr998
Alternate JournalNucleic Acids Res.
PubMed ID22110033
PubMed Central IDPMC3245096
Grant List088944 / / Wellcome Trust / United Kingdom
BB/E007511/1 / / Biotechnology and Biological Sciences Research Council / United Kingdom
BB/G022577/1 / / Biotechnology and Biological Sciences Research Council / United Kingdom
R01GM079429-01A1 / GM / NIGMS NIH HHS / United States
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