Up-to-date catalogues of yeast protein complexes.

TitleUp-to-date catalogues of yeast protein complexes.
Publication TypeJournal Article
Year of Publication2009
AuthorsPu, S., Wong J., Turner B., Cho E., and Wodak S. J.
JournalNucleic Acids Res
Volume37
Issue3
Pagination825-31
Date Published2009 Feb
ISSN1362-4962
KeywordsCatalogs as Topic, Internet, Protein Interaction Mapping, Reference Standards, Saccharomyces cerevisiae Proteins
Abstract

Gold standard datasets on protein complexes are key to inferring and validating protein-protein interactions. Despite much progress in characterizing protein complexes in the yeast Saccharomyces cerevisiae, numerous researchers still use as reference the manually curated complexes catalogued by the Munich Information Center of Protein Sequences database. Although this catalogue has served the community extremely well, it no longer reflects the current state of knowledge. Here, we report two catalogues of yeast protein complexes as results of systematic curation efforts. The first one, denoted as CYC2008, is a comprehensive catalogue of 408 manually curated heteromeric protein complexes reliably backed by small-scale experiments reported in the current literature. This catalogue represents an up-to-date reference set for biologists interested in discovering protein interactions and protein complexes. The second catalogue, denoted as YHTP2008, comprises 400 high-throughput complexes annotated with current literature evidence. Among them, 262 correspond, at least partially, to CYC2008 complexes. Evidence for interacting subunits is collected for 68 complexes that have only partial or no overlap with CYC2008 complexes, whereas no literature evidence was found for 100 complexes. Some of these partially supported and as yet unsupported complexes may be interesting candidates for experimental follow up. Both catalogues are freely available at: http://wodaklab.org/cyc2008/.

DOI10.1093/nar/gkn1005
Alternate JournalNucleic Acids Res.
PubMed ID19095691
PubMed Central IDPMC2647312