Automatic procedures for protein design.

TitleAutomatic procedures for protein design.
Publication TypeJournal Article
Year of Publication2001
AuthorsJaramillo, A., Wernisch L., Hery S., and Wodak S. J.
JournalComb Chem High Throughput Screen
Volume4
Issue8
Pagination643-59
Date Published2001 Dec
ISSN1386-2073
KeywordsAmino Acid Sequence, Automation, Drug Design, Models, Molecular, Molecular Sequence Data, Protein Conformation, Protein Engineering, Protein Folding, Proteins
Abstract

This review describes computational procedures for deriving the amino acid sequences that are compatible with a given protein backbone structure. Such procedures can be used to gain insight into the constraints imposed by the 3D structure of the protein sequence, or to design proteins that are likely to adopt a given backbone conformation. We start by presenting a short overview of the various types of approaches to protein design developed over more than a decade. This is followed by a more detailed presentation of a recently developed sequence selection procedure DESIGNER. This latter presentation illustrates the basic principles underlying this type of procedures, described what they may teach us when applied to small proteins, and highlights issues that need to be addressed in order to go forward.

Alternate JournalComb. Chem. High Throughput Screen.
PubMed ID11812260