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Bioinformatics
Sahakyan, A. B., W. F. Vranken, A. Cavalli, and M. Vendruscolo,
"Structure-based prediction of methyl chemical shifts in proteins.",
J Biomol NMR, vol. 50, issue 4, pp. 331-46, 2011 Aug.
Sahakyan, A. B., W. F. Vranken, A. Cavalli, and M. Vendruscolo,
"Using side-chain aromatic proton chemical shifts for a quantitative analysis of protein structures.",
Angew Chem Int Ed Engl, vol. 50, issue 41, pp. 9620-3, 2011 Oct 4.
Velankar, S., Y. Alhroub, C. Best, S. Caboche, M. J. Conroy, J. M. Dana, M. A. Fernande Montecelo, G. van Ginkel, A. Golovin, S. P. Gore, et al.,
"PDBe: Protein Data Bank in Europe.",
Nucleic Acids Res, vol. 40, issue Database issue, pp. D445-52, 2012 Jan.
Vranken, W. F., G. W. Vuister, and A. M. J. J. Bonvin,
"NMR-based modeling and refinement of protein 3D structures.",
Methods Mol Biol, vol. 1215, pp. 351-80, 2015.
Rosato, A., J. M. Aramini, C. Arrowsmith, A. Bagaria, D. Baker, A. Cavalli, J. F. Doreleijers, A. Eletsky, A. Giachetti, P. Guerry, et al.,
"Blind testing of routine, fully automated determination of protein structures from NMR data.",
Structure, vol. 20, issue 2, pp. 227-36, 2012 Feb 8.
Camilloni, C., A. De Simone, W. F. Vranken, and M. Vendruscolo,
"Determination of secondary structure populations in disordered states of proteins using nuclear magnetic resonance chemical shifts.",
Biochemistry, vol. 51, issue 11, pp. 2224-31, 2012 Mar 20.
Sahakyan, A. B., A. Cavalli, W. F. Vranken, and M. Vendruscolo,
"Protein structure validation using side-chain chemical shifts.",
J Phys Chem B, vol. 116, issue 16, pp. 4754-9, 2012 Apr 26.
da Silva, A. W. Sousa, and W. F. Vranken,
"ACPYPE - AnteChamber PYthon Parser interfacE.",
BMC Res Notes, vol. 5, pp. 367, 2012.
Doreleijers, J. F., A. W. Sousa da Silva, E. Krieger, S. B. Nabuurs, C. A. E. M. Spronk, T. J. Stevens, W. F. Vranken, G. Vriend, and G. W. Vuister,
"CING: an integrated residue-based structure validation program suite.",
J Biomol NMR, vol. 54, issue 3, pp. 267-83, 2012 Nov.
van der Schot, G., Z. Zhang, R. Vernon, Y. Shen, W. F. Vranken, D. Baker, A. M. J. J. Bonvin, and O. F. Lange,
"Improving 3D structure prediction from chemical shift data.",
J Biomol NMR, vol. 57, issue 1, pp. 27-35, 2013 Sep.
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